View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5118_low_4 (Length: 437)
Name: NF5118_low_4
Description: NF5118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5118_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 2535421 - 2535027
Alignment:
| Q |
18 |
aattctgggttgcatgagatgagtctcttgatttttggctttctgcttgctgctcgctcgtctttctaaacgtgatgctaattttcgtcgtcgtcttgtt |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2535421 |
aattctgggttgtatgagatgagtctcttgatttttggctttctgcttgctactcgctcgtctttctaaacgtgatgctaattttcgtcgttgtcttgtt |
2535322 |
T |
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| Q |
118 |
gattcaggtgccgtctcagccgtgcttttctgtcttgttcaatttctgggttgtatgagatatgaatgttgttcaaagttcatgtaaacaattaagtttt |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2535321 |
gattcaggtgccgtctccgccgtgcttttctgtcttgttcaatttctgggttgtatgagatatgaatgttgttcaaagttcatgtaaacaattaagtttt |
2535222 |
T |
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| Q |
218 |
ctttgagaaaaacaattaagttttctaaatagcaatgttaacagaaaacgattgaagtataagttatacttcctcaaagattcaaacacgacgggaaagg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2535221 |
ctttgagaaaaacaattaagttttctaaatagcaatgttaacagaaaaggattgaagtataagttatacttcctcaaatattcaaacacgacgggaaagg |
2535122 |
T |
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| Q |
318 |
cataacagagcaacaacagcagcaagaggaacatgatagtggtagattgcatagaatgatggcttggaatgctaataatgttaatgctaatgctg |
412 |
Q |
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| T |
2535121 |
cataacagagcaacaacagcagcaagaggatcatgatagtggtagattgcatagaatgatggcttggaatgctaataatgttaatgctaatgctg |
2535027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 334 - 416
Target Start/End: Original strand, 22328681 - 22328763
Alignment:
| Q |
334 |
cagcagcaagaggaacatgatagtggtagattgcatagaatgatggcttggaatgctaataatgttaatgctaatgctgcaga |
416 |
Q |
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| T |
22328681 |
cagcatcaagaggaacatgataacggcagattgaatagaatgatggcttggaatgctaataatattaatgctaatgctgcaga |
22328763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 11446825 - 11447075
Alignment:
| Q |
18 |
aattctgggttgcatgagat--gagtctcttgatttttggctttctgcttgctgctcgctcgtctttctaaacgtgatgctaattttcgtcgtcgtcttg |
115 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
11446825 |
aattctgggttgtatgagatatgagtctcttgatttttggctttctgcttgctgctcgctcgtctttctaaacatgatgctaattttcgtcgccgtcttg |
11446924 |
T |
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| Q |
116 |
ttgattcaggtgccgtctcagccgtgcttttctgtcttgttcaatttctgggttgtatgagatatgaatgttgttcaaagttcatgtaaacaattaagtt |
215 |
Q |
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| T |
11446925 |
ttgattcaggtgccgtctccgccgtgcttttctgtcttgttcaatttctgggttgtatgagatatgaatgttgttcaaagttcatgtaaacaattaagtt |
11447024 |
T |
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| Q |
216 |
ttctttgagaaaaacaattaagttttctaaatagcaatgttaacagaaaac |
266 |
Q |
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| T |
11447025 |
ttctttgagcaaaacaattaagttttctaaatagcaatgttaacagaaaac |
11447075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 324 - 416
Target Start/End: Original strand, 11447743 - 11447835
Alignment:
| Q |
324 |
agagcaacaacagcagcaagaggaacatgatagtggtagattgcatagaatgatggcttggaatgctaataatgttaatgctaatgctgcaga |
416 |
Q |
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| T |
11447743 |
agagcaacaacagcagcaagaggaacatgatagtggtagattgcatagaatgatggcttggaatgctaataatgttaatgctaatgctgcaga |
11447835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 36448639 - 36448723
Alignment:
| Q |
70 |
ctcgctcgtctttctaaacgtgatgctaattttcgtcgtcgtcttgttgattcaggtgccgtctcagccgtgcttttctgtcttg |
154 |
Q |
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| T |
36448639 |
ctcgctcgtctttctaaacgtgatgccagtttccgtcgtcgtcttgttgattccggtgccgtctctgctgtgcttttctgtcttg |
36448723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 327
Target Start/End: Original strand, 47563618 - 47563702
Alignment:
| Q |
246 |
atagcaatgtta--acagaaaacgattgaagtataagttatactt-cctcaaagattcaaacacgacgggaaaggcataacagag |
327 |
Q |
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| T |
47563618 |
atagcaatgttattacagcaaacgattgaagtataagttatactttcctcaaagattcaaacgtgacggaaaaggcataacagag |
47563702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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