View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5119-Insertion-1 (Length: 180)
Name: NF5119-Insertion-1
Description: NF5119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5119-Insertion-1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 1e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 1e-76
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 17438730 - 17438902
Alignment:
| Q |
8 |
cctaattgtgtgcgaaatttcttatggaggctggctaaattgattctccctaccagaggtcgtctagaaaagaaaggtatttccttggacacaatctgcc |
107 |
Q |
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| T |
17438730 |
cctaattgtgtgcgtaatttcttgtggaggatggctaaattgattctccctaccagaggccgtctagaaaagaaaggtatttccttggacacaatctgcc |
17438829 |
T |
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| Q |
108 |
ccctttgttacagtgaaaaagagagtcacgagcatctctttatgctctgcccgttagtgcagcagatctggtt |
180 |
Q |
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| T |
17438830 |
ccctttgttacagtgaaaaagagagtcatgagcatctctttatgctctgcccgttagtgcaacagatttggtt |
17438902 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 9522379 - 9522415
Alignment:
| Q |
48 |
tgattctccctaccagaggtcgtctagaaaagaaagg |
84 |
Q |
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| T |
9522379 |
tgattctccccaccagaggtcgactagaaaagaaagg |
9522415 |
T |
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