View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5119-Insertion-2 (Length: 345)
Name: NF5119-Insertion-2
Description: NF5119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5119-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 35248218 - 35248507
Alignment:
| Q |
15 |
catgcatgcatgcagcattgtactctactcacagttcttcttttgggt---------ccatgttaaaggaaatggttgttgcacttagatgaagaagatg |
105 |
Q |
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| T |
35248218 |
catgcatgcatgcagcattgtactctactcacagttcttctttgggattttttgtatccatgttaaaggaaatggttcttgcacttagatgaagaagatg |
35248317 |
T |
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| Q |
106 |
attaatgaaagaaaatgaaaggagagaaagtgaagtactgcaagaaaatagcgagtgaccatgcagagtcatgcataacaagaaaatcttttcattttta |
205 |
Q |
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| T |
35248318 |
attaatgaaagaaaattaaaggagagaaagtgaagtactgcaagacaatagcgagtgaccatgcagagtcatgcataacaagaaaatcttttcattttta |
35248417 |
T |
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| Q |
206 |
tactgtggcggttaagtgtctggttagnnnnnnnnngttggtttctttttggattgtcacatatataattcacaattcccgttggtacgc |
295 |
Q |
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| T |
35248418 |
tactgtggcggttaagtgtgtggttagtttttttttgttggtttgtttttggattgtcacatatataattcacaattcccgttggtacgc |
35248507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 35254716 - 35254942
Alignment:
| Q |
15 |
catgcatgcatgcagcattgtactctactcacagttcttcttttgggt---------ccatgttaaaggaaatggttgttgcacttagatgaagaagatg |
105 |
Q |
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| T |
35254716 |
catgcatgcatgcagcattgtactctactcacagttcttctttgggattttttgtatccatgttaaaggaaatggttcttgcacttagatgaagaagatg |
35254815 |
T |
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| Q |
106 |
attaatgaaagaaaatgaaaggagagaaagtgaagtactgcaagaaaatagcgagtgaccatgcagagtcatgcataacaagaaaatcttttcattttta |
205 |
Q |
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| T |
35254816 |
attaatgaaagaaaataaaaggagagaaagtgaagtactgcaagacaatagcgagtgaccatgcagagtcatgcataacaagaaaatcttttcattttta |
35254915 |
T |
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| Q |
206 |
tactgtggcggttaagtgtctggttag |
232 |
Q |
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| T |
35254916 |
tactgtggcggttaagtgtgtggttag |
35254942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 35279396 - 35279442
Alignment:
| Q |
7 |
agaacatgcatgcatgcatgcagcattgtactctactcacagttctt |
53 |
Q |
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| T |
35279396 |
agaacatgcatgcatgcatgcagcattgtactctactcacagttctt |
35279442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 327
Target Start/End: Original strand, 35248532 - 35248565
Alignment:
| Q |
294 |
gcaacatgaaaagaatccggtacataggaagata |
327 |
Q |
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| T |
35248532 |
gcaacatgaaaagaatccggtacataggaagata |
35248565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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