View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5119-Insertion-3 (Length: 319)

Name: NF5119-Insertion-3
Description: NF5119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5119-Insertion-3
NF5119-Insertion-3
[»] chr5 (1 HSPs)
chr5 (7-319)||(27965539-27965868)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 319
Target Start/End: Complemental strand, 27965868 - 27965539
Alignment:
Q  7 aaataccacttaatacattttattatttggggctacttatatatattttttatgaacaaatttaagatgaaagaattctttctcggtctaacatagaaac 106  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27965868 aaataccacttaatacattttattatttggg-ctacttatatatattttttatgaacaaatttaagatgaaagaattgtttctcggtctaacatagaaac 27965770  T
Q  107 ctttcaaggtctaagtttatttacagagagaaaattatatttattttcattttacaacttgatcaa-----------------acttctttttcatccga 189  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||    
T  27965769 ctttcaaggtctaagtttatttaca--gagaaaattatatttattttcattttacaacttgatcaaacttttaaagttgagttacttctttttcatccga 27965672  T
Q  190 tatatctaaagtattatgtttattttttatttaatttaataattatacgttcaaaagtatgcattgacaatataaaatt---ttatatactcattcaaat 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  27965671 tatatctaaagtattatgtttattttttatttaatttaataattatacgttcaaaagtatgcattgacaatataaaattttattatatactcattcaaat 27965572  T
Q  287 atactcaacaccggctaattattagacgttcca 319  Q
    |||||||||||||||||||||||||||||||||    
T  27965571 atactcaacaccggctaattattagacgttcca 27965539  T

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