View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5119-Insertion-4 (Length: 146)
Name: NF5119-Insertion-4
Description: NF5119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5119-Insertion-4 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0155 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 100; Significance: 8e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 8e-50
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 2662263 - 2662124
Alignment:
| Q |
7 |
atgttcatctcccatcaaactaatgaacaaattattagagaaaaaataaatgatgtaaagtannnnnnnnactgaagataacaacatatatataattcta |
106 |
Q |
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| T |
2662263 |
atgttcatctcccatcaaactaatgaacaaattattagagaaaaaataaataacgtaaagtattttttttactgaaaataacaacatatatataattcta |
2662164 |
T |
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| Q |
107 |
catttaattaatgattaggttgttctattgttgaagtgag |
146 |
Q |
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| T |
2662163 |
catttaattaatgattaggttgttcttttgttgaagtgag |
2662124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155 (Bit Score: 95; Significance: 8e-47; HSPs: 1)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 95; E-Value: 8e-47
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 37446 - 37308
Alignment:
| Q |
7 |
atgttcatctcccatcaaactaatgaacaaattattagagaaaaaataaatgatgtaaagtannnnnnnnactgaagataacaacatatatataattcta |
106 |
Q |
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| T |
37446 |
atgttcatctcccatcaaactaatgaacaaattattagagaaaaaataaataacgtaaagtattttttt-actgaaaataacaacatatatataattcta |
37348 |
T |
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| Q |
107 |
catttaattaatgattaggttgttctattgttgaagtgag |
146 |
Q |
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| T |
37347 |
catttaattaatgattaggttgttcttttgttgaagtgag |
37308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 22361902 - 22362047
Alignment:
| Q |
7 |
atgttcatctcccat--caaactaatgaacaaattattagagaaaaaataaatgatgtaaag----tannnnnnnnactgaagataacaacatatatata |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| | |||||| |||||||||| |||||| |
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| T |
22361902 |
atgttcatctcccatatcaaactaatgaacaaattattagagaaaaaataaataacgtaaaagtttttttttttttactgaaaataacaacatgtatata |
22362001 |
T |
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| Q |
101 |
attctacatttaattaatgattaggttgttctattgttgaagtgag |
146 |
Q |
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| T |
22362002 |
attttacatttaattaatgattagcttgttcttttgttgcagtgag |
22362047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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