View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5119_high_7 (Length: 257)
Name: NF5119_high_7
Description: NF5119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5119_high_7 |
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| [»] scaffold0155 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 140 - 251
Target Start/End: Original strand, 2662596 - 2662707
Alignment:
| Q |
140 |
gatgtcataatgtttgtttgcattttgatcacactgtttgttgacatggataaaaagatgaagatcatgaagaccttaggtgttaattttttgttctctt |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2662596 |
gatgtcataatgtttgtttgcattttgatcacactgtttgttgacatggataaaaagatgaagatcatgaagaccataggtgttaattttttgttctctt |
2662695 |
T |
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| Q |
240 |
tatattcttcga |
251 |
Q |
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|||||||||||| |
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| T |
2662696 |
tatattcttcga |
2662707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 2662456 - 2662540
Alignment:
| Q |
1 |
tgaaaactttttagtccaa-ttctataaattttcttgagagagggtgtgccaactgtcaattcctcataaagtgtatcgttggat |
84 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2662456 |
tgaaaactttttagtccaaattctataaattttcttgagatagggtgtgccaactgtcaattcctcataaagtgtatcgttggat |
2662540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 140 - 251
Target Start/End: Original strand, 37836 - 37947
Alignment:
| Q |
140 |
gatgtcataatgtttgtttgcattttgatcacactgtttgttgacatggataaaaagatgaagatcatgaagaccttaggtgttaattttttgttctctt |
239 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
37836 |
gatgtcataatgtttgtttgcattttgatcacactatttgttgacatggataaaaagatgaagatcatgaagaccataagtgttaattttttgttctctt |
37935 |
T |
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| Q |
240 |
tatattcttcga |
251 |
Q |
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|||||||||||| |
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| T |
37936 |
tatattcttcga |
37947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 37698 - 37780
Alignment:
| Q |
1 |
tgaaaactttttagtccaattctataaattttcttgagagagggtgtgccaactgtcaattcctcataaagtgtatcgttggat |
84 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37698 |
tgaaaactttttagtccaattctataaattttcttgagagagggtgtgccaactgtcaatt-ctcataaagtgtatcgttggat |
37780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 22361646 - 22361561
Alignment:
| Q |
2 |
gaaaactttttagtccaattctataaattttcttgagagagggtgtgccaactgtcaattcctcataaagtgtatcgttggatgta |
87 |
Q |
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|||||||||||| |||||||||||| | ||||||| | |||||||| |||||||||| |||| ||||||||| ||| |||||||| |
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| T |
22361646 |
gaaaactttttactccaattctatataagttcttgacatagggtgtgtcaactgtcaagtccttataaagtgtgtcgctggatgta |
22361561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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