View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5119_low_12 (Length: 242)
Name: NF5119_low_12
Description: NF5119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5119_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 43184953 - 43184728
Alignment:
| Q |
1 |
aaatcattattactattagaaatttttaaaaataatatttctaatttgnnnnnnnnnnn---cctcagttggggtaagagagatatgagctgtttttgcc |
97 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
43184953 |
aaatcattattactattagaaattttaaaaaagaatatttctaatttgaaagaaaaaaaaaacctcagttggggtaagagagatgtgagctgtttttgcc |
43184854 |
T |
|
| Q |
98 |
aaatgagacacatttggaggttcaagagaggaacaatttgtttttgaagacaacctacgaaactgtaacaacttgtgttggattttcgaattcgacaatg |
197 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43184853 |
aaatgagacacatttggaggttctagagaggaacaatttgtttttgaagacaacctacgaaactgtaacaacttgtgttggattttcgaattcgacaatg |
43184754 |
T |
|
| Q |
198 |
ataacgataatggtgttcctctgagt |
223 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
43184753 |
ataacgataatggtgttcctctgagt |
43184728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 18477122 - 18477003
Alignment:
| Q |
98 |
aaatgagacacatttggaggttcaagagaggaacaatttgtttttgaagacaacctacgaaactgtaacaacttgtgttggattttcgaattcgacaatg |
197 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | |||||||||| |
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| T |
18477122 |
aaatgagacacattcggaggttcaagagaggaacaatttgtttttgaagacaacctacgaaacagtaacaacttatgttggagt------ttcgacaatg |
18477029 |
T |
|
| Q |
198 |
ataacgataatggtgttcctctgagt |
223 |
Q |
| |
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|||| |||||||||||||||||||| |
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| T |
18477028 |
ataatcataatggtgttcctctgagt |
18477003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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