View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5119_low_2 (Length: 595)

Name: NF5119_low_2
Description: NF5119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5119_low_2
NF5119_low_2
[»] chr5 (5 HSPs)
chr5 (11-483)||(28601788-28602260)
chr5 (498-562)||(28602626-28602690)
chr5 (153-228)||(21743014-21743089)
chr5 (160-211)||(30264567-30264618)
chr5 (160-218)||(3103159-3103217)
[»] chr2 (9 HSPs)
chr2 (160-232)||(12457025-12457097)
chr2 (162-229)||(16152546-16152613)
chr2 (160-218)||(9154145-9154203)
chr2 (168-228)||(2485299-2485359)
chr2 (160-228)||(38985133-38985201)
chr2 (169-228)||(21924836-21924895)
chr2 (160-193)||(19477209-19477242)
chr2 (168-229)||(43939436-43939497)
chr2 (162-226)||(33810626-33810690)
[»] chr8 (6 HSPs)
chr8 (167-229)||(4410795-4410857)
chr8 (160-228)||(38125584-38125652)
chr8 (160-218)||(24802565-24802623)
chr8 (160-229)||(15196499-15196568)
chr8 (153-229)||(36430424-36430500)
chr8 (167-233)||(44068303-44068369)
[»] chr4 (3 HSPs)
chr4 (160-228)||(32564829-32564897)
chr4 (163-229)||(7209068-7209134)
chr4 (160-212)||(42576933-42576985)
[»] chr3 (4 HSPs)
chr3 (160-232)||(42380547-42380619)
chr3 (160-232)||(42409261-42409333)
chr3 (167-230)||(25353870-25353933)
chr3 (153-231)||(33896653-33896731)
[»] chr7 (5 HSPs)
chr7 (153-228)||(19989079-19989154)
chr7 (160-218)||(31448374-31448432)
chr7 (160-230)||(10248801-10248871)
chr7 (160-228)||(9077532-9077600)
chr7 (160-228)||(28885482-28885550)
[»] chr1 (6 HSPs)
chr1 (164-207)||(6380162-6380205)
chr1 (160-212)||(6951053-6951105)
chr1 (153-217)||(11248643-11248707)
chr1 (160-212)||(46836393-46836445)
chr1 (174-229)||(59656-59711)
chr1 (160-228)||(7255134-7255202)
[»] scaffold0001 (1 HSPs)
scaffold0001 (160-212)||(504607-504659)
[»] chr6 (3 HSPs)
chr6 (168-228)||(6865227-6865287)
chr6 (168-231)||(1520897-1520960)
chr6 (160-228)||(31144696-31144764)


Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 11 - 483
Target Start/End: Original strand, 28601788 - 28602260
Alignment:
Q  11 cagagatgtatccagcacctcagattggaaacactgaaatgccaccagaagatggctttacttggagaaaatatggccaaaaagaaatacttggccgcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28601788 cagagatgtatccagcacctcagattggaaacactgaaatgccaccagaagatggctttacttggagaaaatatggccaaaaagaaatacttggccgcaa 28601887  T
Q  111 gcacccaaggtaaattaacaataattacatagaattgaactttacttcgtccgtccctatatctaagcacccttatattagagacaaagggtgcttatat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| ||||||||| ||| |||||||||||    
T  28601888 gcacccaaggtaaattaacaataattacatagaattgaactttacttcctccgttcttatatctaagcacccttttattagagataaatggtgcttatat 28601987  T
Q  211 atcgggacagagggagtataaatatagggtaataatttccataaagagtttgaaagtttcaattctaagacaaattcgtctttcattatacaccatccag 310  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28601988 atcaggacagagggagtataaatatagggtaataatttccataaagagtttgaaagtttcaattctaagacaaattcgtctttcattatacaccatccag 28602087  T
Q  311 aaaaccttatacctttcttctaagaatatttcttggtcatgttgaaaattcagtaggacaataagtgtgcactatgaattgactcattcacacaccataa 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28602088 aaaaccttatacctttcttctaagaatatttcttggtcatgttgaaaattcagtaggacaataagtgtgcactatgaattgactcattcacacaccataa 28602187  T
Q  411 caagacaagttgactatttacattaatgcatgcataagagacaactagtcccttttacatcacaactatcatt 483  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28602188 caagacaagttgactatttacattaatgcatgcataagagacaactagtcccttttacatcacaactatcatt 28602260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 498 - 562
Target Start/End: Original strand, 28602626 - 28602690
Alignment:
Q  498 ctaattataggaataaattcatcacgtttattttgccttgattacttgttaaatatttcttttgg 562  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28602626 ctaattataggaataaattcatcacgtttattttgccttgattacttgttaaatatttcttttgg 28602690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 21743089 - 21743014
Alignment:
Q  153 tacttcgtccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagta 228  Q
    |||||| ||||||||||||||||||||| ||| |||||||| ||||| ||||||| ||||  |||| |||||||||    
T  21743089 tacttcatccgtccctatatctaagcactcttttattagaggcaaagagtgcttacatataaggacggagggagta 21743014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 30264618 - 30264567
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatata 211  Q
    ||||||||||||||||||||| ||| |||||||| |||| | ||||||||||    
T  30264618 tccgtccctatatctaagcactcttttattagaggcaaatgatgcttatata 30264567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 3103159 - 3103217
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggac 218  Q
    ||||| ||||||| ||| ||||||| ||||||||  ||||||||||||||||| |||||    
T  3103159 tccgttcctatatataaacacccttttattagaggtaaagggtgcttatatatagggac 3103217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 12457025 - 12457097
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagtataaa 232  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||| |||| |||||||||||||||||||    
T  12457025 tccgtccctatatctaagcacccttttattagaggcaaagggtgcttacatatagggacagagggagtataaa 12457097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 16152546 - 16152613
Alignment:
Q  162 cgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagtat 229  Q
    ||||||| ||| ||||||||||| |||||||||||||||||||||||||||  |||| ||||||||||    
T  16152546 cgtccctctatataagcacccttttattagagacaaagggtgcttatatatatggacggagggagtat 16152613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 9154203 - 9154145
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggac 218  Q
    ||||||||||||||||||||||||| ||||||||  |||||||| ||| |||| |||||    
T  9154203 tccgtccctatatctaagcacccttttattagaggaaaagggtggttacatatagggac 9154145  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 2485299 - 2485359
Alignment:
Q  168 tatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagta 228  Q
    ||||||||| ||||||||||||||| ||||| ||||| || |||| ||||| |||||||||    
T  2485299 tatatctaaacacccttatattagaaacaaatggtgcctacatatagggaccgagggagta 2485359  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 38985133 - 38985201
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagta 228  Q
    ||||||||||||| ||||||| ||| ||||||||  ||| ||||||||||||| ||||| || ||||||    
T  38985133 tccgtccctatatataagcactcttttattagagggaaatggtgcttatatatagggacggaaggagta 38985201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 21924895 - 21924836
Alignment:
Q  169 atatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagta 228  Q
    |||| ||||||||||| ||||||||  ||| ||||||||||||| ||||| |||||||||    
T  21924895 atatttaagcacccttttattagaggtaaaaggtgcttatatatagggacggagggagta 21924836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 19477242 - 19477209
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagag 193  Q
    ||||||||||||||||||||||||| ||||||||    
T  19477242 tccgtccctatatctaagcacccttttattagag 19477209  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 43939497 - 43939436
Alignment:
Q  168 tatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagtat 229  Q
    ||||||||||||||||| |||||||| ||||  ||||||| |||| ||||| |||| |||||    
T  43939497 tatatctaagcacccttttattagaggcaaatagtgcttacatatagggacggaggaagtat 43939436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 33810626 - 33810690
Alignment:
Q  162 cgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggag 226  Q
    ||||||||||| ||||||||||| ||||||||  |||  ||||||| |||| ||||| |||||||    
T  33810626 cgtccctatatgtaagcacccttttattagaggaaaattgtgcttacatatagggacggagggag 33810690  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 4410857 - 4410795
Alignment:
Q  167 ctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagtat 229  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||||| ||||| ||||||||||    
T  4410857 ctatatataagcactcttttattagagacaaagggtgcttatatatagggacggagggagtat 4410795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 38125652 - 38125584
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagta 228  Q
    ||||||||||||| ||||||||||| |||||||| |||| |||||||| ||||  |||| |||||||||    
T  38125652 tccgtccctatatgtaagcacccttttattagaggcaaaaggtgcttacatatatggacggagggagta 38125584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 24802623 - 24802565
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggac 218  Q
    ||||||||||||||||||||||||| |||||||  |||| |||||||| |||| |||||    
T  24802623 tccgtccctatatctaagcacccttttattagatgcaaaaggtgcttacatatagggac 24802565  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 15196568 - 15196499
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagtat 229  Q
    ||||||||||||||||||||||||| |||||||   ||| | |||||| |||| ||||| ||||||||||    
T  15196568 tccgtccctatatctaagcacccttttattagaagaaaaagatgcttacatatagggacggagggagtat 15196499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 36430424 - 36430500
Alignment:
Q  153 tacttcgtccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagtat 229  Q
    |||||| ||||||||||||| ||||||||||| |||||||| ||    ||||||| |||| ||||| ||||||||||    
T  36430424 tacttcctccgtccctatatttaagcacccttttattagaggcaccttgtgcttacatatagggacggagggagtat 36430500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 44068369 - 44068303
Alignment:
Q  167 ctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagtataaat 233  Q
    |||||||||||||| ||| ||||||||||||| | |||||| |||| || || || |||||||||||    
T  44068369 ctatatctaagcacacttttattagagacaaacgatgcttacatataggaacggatggagtataaat 44068303  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 32564897 - 32564829
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagta 228  Q
    ||||||||||||| ||||||||||| |||||||| ||||| ||||||| |||| ||||| |||||||||    
T  32564897 tccgtccctatatgtaagcacccttttattagaggcaaagagtgcttacatatagggacggagggagta 32564829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 7209068 - 7209134
Alignment:
Q  163 gtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagtat 229  Q
    ||||||||||||||||||  || |||||||||||||| ||||||| |||| ||||| ||||||||||    
T  7209068 gtccctatatctaagcacttttttattagagacaaagagtgcttacatatagggacggagggagtat 7209134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 42576985 - 42576933
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatatat 212  Q
    ||||| |||||||||||||||| || |||||||| ||||  ||||||||||||    
T  42576985 tccgttcctatatctaagcaccattttattagaggcaaattgtgcttatatat 42576933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 42380619 - 42380547
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagtataaa 232  Q
    |||||||||||||||||  |||||| |||||||| ||||||||||||| |||| ||||| || ||||||||||    
T  42380619 tccgtccctatatctaaaaacccttttattagaggcaaagggtgcttacatatagggacggatggagtataaa 42380547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 42409333 - 42409261
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagtataaa 232  Q
    |||||||||||||||||  |||||| |||||||| ||||||||||||| |||| ||||| || ||||||||||    
T  42409333 tccgtccctatatctaaaaacccttttattagaggcaaagggtgcttacatatagggacggatggagtataaa 42409261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 25353870 - 25353933
Alignment:
Q  167 ctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagtata 230  Q
    |||||| ||||||||||| ||||||||||||| ||||||||||||| | ||| |||||||||||    
T  25353870 ctatatataagcacccttttattagagacaaacggtgcttatatatagagacggagggagtata 25353933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 33896653 - 33896731
Alignment:
Q  153 tacttcgtccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagtataa 231  Q
    |||||| ||||||||||||| |||||||||||  ||||||| |||| |||| ||| |||| ||||| ||||||||||||    
T  33896653 tacttcttccgtccctatatataagcaccctttcattagaggcaaatggtgtttacatatagggacggagggagtataa 33896731  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 19989154 - 19989079
Alignment:
Q  153 tacttcgtccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagta 228  Q
    |||||| |||||||||||||||||||||| || |||||||| |||| |||||||| |||| || || |||||||||    
T  19989154 tacttcctccgtccctatatctaagcaccattttattagaggcaaatggtgcttacatataggaacggagggagta 19989079  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 31448432 - 31448374
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggac 218  Q
    ||||||||||||||||||||||||| |||||||  ||||||||||||| |||| |||||    
T  31448432 tccgtccctatatctaagcacccttttattagatgcaaagggtgcttacatatagggac 31448374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 10248871 - 10248801
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagtata 230  Q
    |||||| |||||||||||||||||| |||||||   |||| |||||||||||  ||||| |||||| ||||    
T  10248871 tccgtctctatatctaagcacccttttattagatgtaaagagtgcttatatagagggacggagggaatata 10248801  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 9077532 - 9077600
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagta 228  Q
    ||||||| ||||| ||||||| ||| ||||||||  |||| ||| ||| |||| |||||||||||||||    
T  9077532 tccgtccttatatttaagcactcttttattagagggaaagagtgtttacatatagggacagagggagta 9077600  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 28885550 - 28885482
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagta 228  Q
    ||||||| ||||| ||||||||||| ||||||||  ||| |||||||| |||| ||||| ||| |||||    
T  28885550 tccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatagggacggagagagta 28885482  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 6380162 - 6380205
Alignment:
Q  164 tccctatatctaagcacccttatattagagacaaagggtgctta 207  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||    
T  6380162 tccctatatctaagcacccttttattagagacaaaaggtgctta 6380205  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 6951105 - 6951053
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatatat 212  Q
    ||||||| ||||||||||||||||| |||||||| ||||| ||||||| ||||    
T  6951105 tccgtccttatatctaagcacccttttattagaggcaaagtgtgcttacatat 6951053  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 11248643 - 11248707
Alignment:
Q  153 tacttcgtccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcggga 217  Q
    |||||| |||||||||||||||||||||  || |||||||| |||| |||||||| |||| ||||    
T  11248643 tacttcctccgtccctatatctaagcactattttattagaggcaaatggtgcttacatataggga 11248707  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 46836445 - 46836393
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatatat 212  Q
    ||||||||||||||||||||||||| |||||||| ||||  ||||||| ||||    
T  46836445 tccgtccctatatctaagcacccttttattagaggcaaaatgtgcttacatat 46836393  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 59656 - 59711
Alignment:
Q  174 taagcacccttatattagagacaaagggtgcttatatatcgggacagagggagtat 229  Q
    |||||||| || ||||||||| ||| ||||||||||||| ||||| ||||||||||    
T  59656 taagcaccattttattagagataaatggtgcttatatatagggacggagggagtat 59711  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 7255202 - 7255134
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagta 228  Q
    ||||| ||||||| ||||||||||| ||||||||  |||  ||||||| |||| ||||| |||||||||    
T  7255202 tccgttcctatatgtaagcacccttttattagagggaaaatgtgcttacatatagggacggagggagta 7255134  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 504659 - 504607
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatatat 212  Q
    ||||||||||||| |||||||| || ||||||||||||| |||||||| ||||    
T  504659 tccgtccctatatgtaagcacctttttattagagacaaaaggtgcttacatat 504607  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 6865227 - 6865287
Alignment:
Q  168 tatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagta 228  Q
    ||||||||||||||||| |||||||  |||||| |||||| |||  |||||||||||||||    
T  6865227 tatatctaagcacccttttattagatgcaaaggatgcttacatacagggacagagggagta 6865287  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 1520960 - 1520897
Alignment:
Q  168 tatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagtataa 231  Q
    ||||||||||||||||| |||||||| ||||| ||||||| |||| ||||  || |||||||||    
T  1520960 tatatctaagcacccttttattagaggcaaagtgtgcttaaatatagggatggatggagtataa 1520897  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 31144764 - 31144696
Alignment:
Q  160 tccgtccctatatctaagcacccttatattagagacaaagggtgcttatatatcgggacagagggagta 228  Q
    ||||||| |||||  |||||||||| |||||||   |||| |||||||||||| ||||| |||||||||    
T  31144764 tccgtccttatatagaagcacccttttattagaaggaaagagtgcttatatatagggacggagggagta 31144696  T

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