View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5119_low_4 (Length: 391)
Name: NF5119_low_4
Description: NF5119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5119_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 80 - 330
Target Start/End: Original strand, 35247927 - 35248176
Alignment:
| Q |
80 |
ctcaattatccatattataaggcaaatgaatagtataatgcaaggagcatcatagaagaaacagttttttgggtaaaatgaataaagaaaaattagcaaa |
179 |
Q |
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| T |
35247927 |
ctcaattatccatattataaggcaaatgaatagtataatgcaaggagcatcaaagaagaaacagtttt-tgggtaaaatgaataaagaaaaattagcaaa |
35248025 |
T |
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| Q |
180 |
agggtgcaaaattaagcataccagggggaatatgtccggtaacatgagcttcattttttaaaatctcagcagtgtttgacaatcccttcttcttgaggta |
279 |
Q |
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| T |
35248026 |
agggtgcaaaattaagcataccagggagaatatgtccggaaactcgagcttcatttttgaaaatcttagcagtgtttgacaatcccttcttcttgaagta |
35248125 |
T |
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| Q |
280 |
atcatacagaaagttttgaaaactacaaagaacacacaggattcatattac |
330 |
Q |
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| T |
35248126 |
atcacacagaaagttttgaaaactacaaagaacacacaggattcgtattac |
35248176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 199 - 330
Target Start/End: Original strand, 35254543 - 35254674
Alignment:
| Q |
199 |
accagggggaatatgtccggtaacatgagcttcattttttaaaatctcagcagtgtttgacaatcccttcttcttgaggtaatcatacagaaagttttga |
298 |
Q |
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| T |
35254543 |
accagggggaaaatgtccggtaacatgagcttcatttttgaaaatctcagcagtgtttgacaatcccttcttcttgaggtaatcatacagaaagttttga |
35254642 |
T |
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| Q |
299 |
aaactacaaagaacacacaggattcatattac |
330 |
Q |
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| T |
35254643 |
aaactacaaagaacacacaggattcatattac |
35254674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 35272626 - 35272724
Alignment:
| Q |
219 |
taacatgagcttcattttttaaaatctcagcagtgtttgacaatcccttcttcttgaggtaatcatacagaaagttttgaaaactacaaagaacacaca |
317 |
Q |
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| T |
35272626 |
taacttgagcttcattttggaaaatctgtgcagtttccaagaatcctttcttcttgaggtaatcatgcagaaagatttgaaaactacacagaacacaca |
35272724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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