View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5119_low_5 (Length: 376)
Name: NF5119_low_5
Description: NF5119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5119_low_5 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 376
Target Start/End: Complemental strand, 27966407 - 27966046
Alignment:
| Q |
15 |
tatgggaggaaaaaattgaaatcgatggaaaatgtgggatttggtcgcaacgtagcaaagacggtccctagtcattggtctaagatttttgtttgtctta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27966407 |
tatgggaggaaaaaattgaaatcgatggaaaatgtgggatttggtcgcaacgtaacaaagacggtccctagtcattggtctaagatttttgtttgtctta |
27966308 |
T |
|
| Q |
115 |
agatgttatgttatgttatttagagtcaatcaagtggcaaatccacattggccaaatcaatcatccaaagacacatccatcccatccacaaaaattcatg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27966307 |
agatgttatgttatgttatttagagtcaatcaagtggcaaatccacattggccaaatcaatcatccaaagacacatccatcccatccacaaaaattcatg |
27966208 |
T |
|
| Q |
215 |
gctgattttaaattcctcatccacatccaaacttccaaaaacaggtaaaaaataaataattaacttctggtactaactaatacctatccgtctcaagaac |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27966207 |
gctgattttaaattcctcatccacatccaaacttccaaaaacaggtaaaaaataaataattaacttctggtactaactaatacatatccgtctcaagaac |
27966108 |
T |
|
| Q |
315 |
ctatgaccaaaggtccacaaattttctacttagacaaacctattatactataatgtttattt |
376 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27966107 |
ctatgacacaaggtccacaaattttctacttagacaaaactattatactataatgtttattt |
27966046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University