View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5119_low_6 (Length: 344)
Name: NF5119_low_6
Description: NF5119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5119_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 62 - 337
Target Start/End: Original strand, 35268360 - 35268635
Alignment:
| Q |
62 |
tagcaactaaagcatgaaacttaatcaccaaaccagcagcaacaaactgtgatacttcattagtcaatgtcccaagaatctgattcatgaacaatagaca |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35268360 |
tagcaactaaagcatgaaacttaatcaccaaaccagcagcaacaaactgtgatacttcattagtcaatgtcccaagaatctgattcatgaacaatagaca |
35268459 |
T |
|
| Q |
162 |
aaacaaacttgcagaaactgagctagaatcataagtctcgccaactaccggaacaccaacaatgtcacaacagaaccaactatgaagtacaaggtctcaa |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35268460 |
aaacaaacttgcagaaactgagctagaatcataagtctcgccaaataccggaacaccaacaatgtcacaacagaaccaactatgaagtacaaggtctcaa |
35268559 |
T |
|
| Q |
262 |
atccaatttaacattctatgtgcaatctgtcagacttcaaatagtagccaaattccaagggtgaacgagcagaacc |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
35268560 |
atccaatttaacattctatgtgcaatctgtcagacttcaaatagtagccaaattccaagggtgaaccagtagaacc |
35268635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 35268299 - 35268339
Alignment:
| Q |
1 |
cagaaatcaagacaaggctaccaaaacagatccgaagccat |
41 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
35268299 |
cagaaatcaaaccaaggcttccaaaacagatccgaagccat |
35268339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University