View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5119_low_7 (Length: 318)

Name: NF5119_low_7
Description: NF5119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5119_low_7
NF5119_low_7
[»] chr1 (1 HSPs)
chr1 (13-318)||(43185027-43185332)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 318
Target Start/End: Complemental strand, 43185332 - 43185027
Alignment:
Q  13 aatatccacttcacattgtggccatactgtcccacgtaactaaggcaaacattaggcttcaacatagagtaaagggtaattaaagtattatccacataaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43185332 aatatccacttcacattgtggccatactgtcccacgtaactaaggcaaacattaggcttcaacatagagtaaagggtaattaaagtattatccacataaa 43185233  T
Q  113 tcattgttacttattctagttcaattatggatgtatgaatcttaccataatgcagaaaatggtgttggaataaaaggtgggtggaaggggtattttaaca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43185232 tcattgttacttattctagttcaattatggatgtatgaatcttaccataatgcagaaaatggtgttggaataaaaggtgggtggaaggggtattttaaca 43185133  T
Q  213 aacaggtggtgggctaacactgagaatccagtgttggtacatccttgtgattcaattgttcctcaattatcctatcaatttactataaaaatagcaaaat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  43185132 aacaggtggtgggctaacactgagaatccagtgttggtacatctttgtgattcaattgttcctcaattatcctatcaaattactataaaaatagccaaat 43185033  T
Q  313 aaaata 318  Q
    ||||||    
T  43185032 aaaata 43185027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University