View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5120-Insertion-2 (Length: 565)
Name: NF5120-Insertion-2
Description: NF5120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5120-Insertion-2 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 8 - 562
Target Start/End: Complemental strand, 44891301 - 44890739
Alignment:
| Q |
8 |
tgaagagcattggaagaaaacgaatatagataagagaagaaagactgaatatagtctaccaagtgagtccacgaagcaaattggtgctgaacaatactag |
107 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44891301 |
tgaagaacattggaagaaaacgaatatagataagagaagaaagactgaatatagtctaccaagtgagtccacgaagcaagttggtgctgaacaatactag |
44891202 |
T |
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| Q |
108 |
ttagtcctacatcgtgtagtcaagagagtgagtaaatggatgtatgatataaaagtggaagtgagtaccacatataattcatacctttctccaccttttc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44891201 |
ttagtcctacatcgtgtagtcaagagagtgagtaaatggatgtatgatataaaagtagaagtgagtaccacatataattcatacctttctccaccttttc |
44891102 |
T |
|
| Q |
208 |
ttggtcttttggctaagatcaaagtgtagtgtacgtttttatctgtttaatatcaagaaattaaactagtttcttgaggaagcagtagtttgctggttaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
44891101 |
ttggtcttttggctaagatcaaagtgtagtgtacgtttttatctgtttaatatcaagaaattaaactagttttttgaggaagcagcagtttgctggttaa |
44891002 |
T |
|
| Q |
308 |
aatgctgaatcgtaaaccttctgtcatggagcgagtgtcggtggagtaggagtatatgcgaggtgctctaagtgggtacatgagtattttggccaagtga |
407 |
Q |
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| T |
44891001 |
aatgccgaatcgtaaaccttctgtcatggagcgagtgtcggtggagtaggagtatatgcaaggtgctctaagtgggtacatgagtattttggccaagtga |
44890902 |
T |
|
| Q |
408 |
ttcaatgttggaaaattgatcttcacatatgtgtttaacctgaaacacatcagtaaaatattgaaataccccttcaacagt--------taaccgagagt |
499 |
Q |
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| T |
44890901 |
ttcaatgttggaaaattgatcttcacatatgtgtttaacctgaaacacatcagtaaaatattgaaataccccttcaacagttaacaaattaaccgacagt |
44890802 |
T |
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| Q |
500 |
agttaactagcgcggaacttcaaacctgaaattacaaaggatgcacatctgaaacactaaatg |
562 |
Q |
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| T |
44890801 |
agttaactaccgctgaacttcaaacctgaaattacaaaggatgcagatctgaaacactaaatg |
44890739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 481
Target Start/End: Complemental strand, 12234264 - 12234201
Alignment:
| Q |
418 |
gaaaattgatcttcacatatgtgtttaacctgaaacacatcagtaaaatattgaaatacccctt |
481 |
Q |
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| T |
12234264 |
gaaaattgatgttcacacatgtgtttaagcttatacacaccaataaaatactgaaatacccctt |
12234201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 482
Target Start/End: Original strand, 44890265 - 44890317
Alignment:
| Q |
429 |
ttcacatatgtgtttaacctgaaacacatcagtaaaatattgaaataccccttc |
482 |
Q |
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| T |
44890265 |
ttcacacatgtgtttaagctgaaacacat-agtaaaatacggaaataccccttc |
44890317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 492
Target Start/End: Original strand, 12233675 - 12233747
Alignment:
| Q |
420 |
aaattgatcttcacatatgtgtttaacctgaaacacatcagtaaaatattgaaataccccttcaacagttaac |
492 |
Q |
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| T |
12233675 |
aaattgttgttcacacatgtgtttaagctgaaacacactaataaaagaccgaaataccccttcgacagttaac |
12233747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 418 - 492
Target Start/End: Complemental strand, 140304 - 140230
Alignment:
| Q |
418 |
gaaaattgatcttcacatatgtgtttaacctgaaacacatcagtaaaatattgaaataccccttcaacagttaac |
492 |
Q |
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| T |
140304 |
gaaaattgttgttcacacatatgtttaagctgaaacacaccagtaaaatatcgaaatacaccttcaacagttaac |
140230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 492
Target Start/End: Complemental strand, 35564430 - 35564356
Alignment:
| Q |
418 |
gaaaattgatcttcacatatgtgtttaacctgaaacacatcagtaaaatattgaaataccccttcaacagttaac |
492 |
Q |
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| T |
35564430 |
gaaaattgatgtttacacacgtgtttaagctgaaacacatcaataaaataccaaaataccccttcggcagttaac |
35564356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 464
Target Start/End: Original strand, 17262634 - 17262679
Alignment:
| Q |
419 |
aaaattgatcttcacatatgtgtttaacctgaaacacatcagtaaa |
464 |
Q |
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| T |
17262634 |
aaaattgttgttcacacatgtgtttaaactgaaacacatcagtaaa |
17262679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 482
Target Start/End: Complemental strand, 10472912 - 10472850
Alignment:
| Q |
418 |
gaaaattgatcttcacatatgtgtttaacctgaaacacatcagtaaaatattgaaataccccttc |
482 |
Q |
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| T |
10472912 |
gaaaattgttgttcacatatgt--ttaagctgaaacacaccagtaaaataccgaaataccccttc |
10472850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 465
Target Start/End: Complemental strand, 21604052 - 21604000
Alignment:
| Q |
413 |
tgttggaaaattgatcttcacatatgtgtttaacctgaaacacatcagtaaaa |
465 |
Q |
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| T |
21604052 |
tgtttgaaaattgttgttcacacatgtgtttaagctgaaacacattagtaaaa |
21604000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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