View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5120-Insertion-3 (Length: 501)

Name: NF5120-Insertion-3
Description: NF5120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5120-Insertion-3
NF5120-Insertion-3
[»] chr5 (1 HSPs)
chr5 (10-501)||(8124634-8125125)


Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 10 - 501
Target Start/End: Original strand, 8124634 - 8125125
Alignment:
Q  10 attaaggcaagctataacactttaactctagagcttaaagttcagaccttttttgatgatatattcataaacttgttcaattatgtatgtaaagtgcaga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8124634 attaaggcaagctataacactttaactctagagcttaaagttcagaccttttttgatgaaatattcataaacttgttcaattatgtatgtaaagtgcaga 8124733  T
Q  110 tatgagagcttgcacttaaataggataaatggtatggccaaggttcttggagtacttgcttctgttggaggagcttcaatcattaccctttacaagggac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8124734 tatgagagcttgcacttaaataggataaatggtatggccaaggttcttggagtacttgcttctgttggaggagcttcaatcattaccctttacaagggac 8124833  T
Q  210 ctaccatttatgctccacatttagcactacatcaaggacaaattttcttgtctgcatttgaggatgccaatgggaaaaacttgaacttgggtggcatcct 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8124834 ctaccatttatgctccacatttagcactacatcaaggacaaattttcttgtctgcatttgaggatgccaatgggaaaaacttgaacttgggtggcatcct 8124933  T
Q  310 tctctttggtcattgtttgtgttggtctggttggattgtgatgcaagcatttgttctgaaaaagtactcagcacaactcacagtttctgcttttacttgc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8124934 tctctttggtcattgtttgtgttggtctggttggattgtgatgcaagcatttgttctgaaaaagtactcagcacaactcacagtttctgcttttacttgc 8125033  T
Q  410 ttctttggtattgtgcagtttgggacaattgcagcctttcttgagaaggatcccaaagcttggcagctcaattccattgaagaggcctacag 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8125034 ttctttggtattgtgcagtttgggacaattgcagcctttcttgagaaggatcccaaagcttggcagctcaattccattgaagaggcctacag 8125125  T

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