View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5120_high_7 (Length: 286)
Name: NF5120_high_7
Description: NF5120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5120_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 9269459 - 9269217
Alignment:
| Q |
18 |
agttttaccggtaacatcctttatagatttcacctcttaggttatttaatttacatcataagttcaccctaatatttttaactattctacaattgtcaaa |
117 |
Q |
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| T |
9269459 |
agttttaccgataacatcctttatagatttcacct-ttaagttatttaatttacatcataagttcactctaatatttttaactattctacaattgccaaa |
9269361 |
T |
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| Q |
118 |
ggattgtcccttttttacatttaataaattatacgattaatttcttccttttctgtttctatccagaaagtcagtctcttctctctatctgtctaccatc |
217 |
Q |
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| T |
9269360 |
ggattttccctttttcacatttaataaattataggattaatttcttc-----------ctatccagaaagtcagtctcttctctccatctgtctaccatc |
9269272 |
T |
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| Q |
218 |
gtcctgctccttctcctctatgcaatgagaattaaacacatttttcctctctatt |
272 |
Q |
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| T |
9269271 |
gtcctgctccttctcctctatgcaatgagaattaagcacatttttcctctctatt |
9269217 |
T |
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