View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5120_low_10 (Length: 238)
Name: NF5120_low_10
Description: NF5120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5120_low_10 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: scaffold0072 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 43 - 238
Target Start/End: Original strand, 41674 - 41869
Alignment:
| Q |
43 |
gttaaaaacatcactagatctgagatgatgctgagaagagaaaaaggattatgttattattgtgatgaacgattctctatatctcataaatgtccaaatc |
142 |
Q |
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| T |
41674 |
gttaaaaacatcactagagctgagatgatgctcagaagagaaaaaggattatgctattattgtgatgaacgattctctatatctcataaatgtccaaatc |
41773 |
T |
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| Q |
143 |
gtcattatttcttatttcaaactgaagaagaagaagaacctgacccaccaccaccgcaaatcacaccatcagctgaccctgaaacaccacctattg |
238 |
Q |
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| T |
41774 |
gtcattatttcttattccaaactgaagaagaagaagaacctgaaccaccaccacaacaaatcacaccatcagctgaccctgaaacaccacctattg |
41869 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 8596019 - 8596080
Alignment:
| Q |
76 |
agaagagaaaaaggattatgttattattgtgatgaacgattctctatatctcataaatgtcc |
137 |
Q |
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| T |
8596019 |
agaagagaaaaaggtttatgttatttttgtgatgagaaattctcattttctcataaatgtcc |
8596080 |
T |
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