View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5120_low_11 (Length: 228)
Name: NF5120_low_11
Description: NF5120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5120_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 2326092 - 2326293
Alignment:
| Q |
9 |
catcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaat |
108 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326092 |
catcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaat |
2326191 |
T |
|
| Q |
109 |
atcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttc |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326192 |
atcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttc |
2326291 |
T |
|
| Q |
209 |
cc |
210 |
Q |
| |
|
|| |
|
|
| T |
2326292 |
cc |
2326293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 2329808 - 2330008
Alignment:
| Q |
10 |
atcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaata |
109 |
Q |
| |
|
||||||| |||||| |||||||| ||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
2329808 |
atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata |
2329907 |
T |
|
| Q |
110 |
tcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttcc |
209 |
Q |
| |
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|||| || |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| || || ||||||| |||||||||||||||||||| |
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| T |
2329908 |
tcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaactcctccgtcttctctgatcgtcctaaagcacttcc |
2330007 |
T |
|
| Q |
210 |
c |
210 |
Q |
| |
|
| |
|
|
| T |
2330008 |
c |
2330008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 209
Target Start/End: Original strand, 2292934 - 2293118
Alignment:
| Q |
25 |
caatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagacctt |
124 |
Q |
| |
|
|||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| || |||||| |
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| T |
2292934 |
caattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccatatcggttctcgacctt |
2293033 |
T |
|
| Q |
125 |
ccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttcc |
209 |
Q |
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|||||| ||| ||||| | ||||||||||||| | |||||||||||| ||||| ||||||| ||||| |||| ||| ||||| |
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| T |
2293034 |
ccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactcatccatcttctctgatcgccctacagctcttcc |
2293118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 2320254 - 2320423
Alignment:
| Q |
25 |
caatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagacctt |
124 |
Q |
| |
|
|||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| || |||||| |
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|
| T |
2320254 |
caattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccatatcggttctcgacctt |
2320353 |
T |
|
| Q |
125 |
ccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcg |
194 |
Q |
| |
|
|||||| |||| ||||| ||||||||| ||||| | |||||||||||| ||| | ||||||| ||||| |
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|
| T |
2320354 |
ccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccatcttctcggatcg |
2320423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 30 - 173
Target Start/End: Original strand, 2302558 - 2302701
Alignment:
| Q |
30 |
gctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatt |
129 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| || ||||||||||| |
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| T |
2302558 |
gctccgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactctccacatcggttctcgaccttccatt |
2302657 |
T |
|
| Q |
130 |
tacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
173 |
Q |
| |
|
| |||| |||| ||||||||||||||| | |||||||||||| |
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|
| T |
2302658 |
ttcatcgatgaccatgctctggcccaccatgttctcgttcaaaa |
2302701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 210
Target Start/End: Original strand, 2350125 - 2350308
Alignment:
| Q |
27 |
atggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttcc |
126 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||| ||||||| ||||| ||||| ||||||||||||||| ||| || ||| | | | |||||||| |
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|
| T |
2350125 |
atggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttcc |
2350224 |
T |
|
| Q |
127 |
atttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttccc |
210 |
Q |
| |
|
|||| ||||||||||| | |||| ||||||||||||||||||||||| ||| | ||||||| ||||| |||| ||| |||||| |
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|
| T |
2350225 |
attttcatctccgaccatactctcgcccaccacgctctcgttcaaaactcagccatcttctctgatcgccctagagctcttccc |
2350308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 173
Target Start/End: Original strand, 2309265 - 2309413
Alignment:
| Q |
25 |
caatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagacctt |
124 |
Q |
| |
|
|||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| || ||||| |
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|
| T |
2309265 |
caattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcattgtccatatcggttctcaacctt |
2309364 |
T |
|
| Q |
125 |
ccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
173 |
Q |
| |
|
|||||| |||| ||||| ||||||||| ||||| | |||||||||||| |
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|
| T |
2309365 |
ccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaa |
2309413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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