View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5120_low_2 (Length: 378)

Name: NF5120_low_2
Description: NF5120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5120_low_2
NF5120_low_2
[»] chr1 (24 HSPs)
chr1 (138-263)||(4906651-4906781)
chr1 (301-341)||(8984208-8984248)
chr1 (301-333)||(1741629-1741661)
chr1 (301-341)||(15351795-15351835)
chr1 (302-341)||(10256802-10256841)
chr1 (301-340)||(26937881-26937920)
chr1 (279-341)||(14958680-14958741)
chr1 (313-341)||(1409129-1409157)
chr1 (301-341)||(5431361-5431401)
chr1 (313-341)||(5431420-5431448)
chr1 (313-341)||(6079143-6079171)
chr1 (301-333)||(7037905-7037937)
chr1 (301-341)||(8984268-8984308)
chr1 (296-340)||(13048672-13048716)
chr1 (296-340)||(13053669-13053713)
chr1 (301-341)||(15351735-15351775)
chr1 (313-341)||(19175668-19175696)
chr1 (313-341)||(19580273-19580301)
chr1 (301-341)||(23944057-23944097)
chr1 (313-341)||(24807971-24807999)
chr1 (302-334)||(31325897-31325929)
chr1 (301-341)||(34597540-34597580)
chr1 (301-341)||(34597593-34597633)
chr1 (281-341)||(38468687-38468746)
[»] chr7 (22 HSPs)
chr7 (281-341)||(44416533-44416592)
chr7 (301-341)||(31417597-31417637)
chr7 (298-341)||(29779731-29779774)
chr7 (301-341)||(15051163-15051203)
chr7 (301-337)||(27242498-27242534)
chr7 (297-341)||(32549901-32549945)
chr7 (289-341)||(35216485-35216536)
chr7 (298-341)||(11602847-11602890)
chr7 (301-340)||(15051103-15051142)
chr7 (298-341)||(35641495-35641538)
chr7 (300-341)||(21113235-21113276)
chr7 (313-341)||(8169176-8169204)
chr7 (281-341)||(8595148-8595207)
chr7 (301-337)||(14995949-14995985)
chr7 (313-341)||(18820011-18820039)
chr7 (284-340)||(22752564-22752619)
chr7 (281-341)||(22752640-22752699)
chr7 (313-341)||(28409604-28409632)
chr7 (313-341)||(32599695-32599723)
chr7 (313-341)||(34840646-34840674)
chr7 (289-341)||(44416612-44416663)
chr7 (313-341)||(47535050-47535078)
[»] chr6 (9 HSPs)
chr6 (301-341)||(3012440-3012480)
chr6 (301-341)||(13276506-13276546)
chr6 (281-341)||(13277102-13277161)
chr6 (282-341)||(15836541-15836599)
chr6 (302-341)||(15836619-15836658)
chr6 (303-341)||(33053845-33053883)
chr6 (281-341)||(33053766-33053825)
chr6 (301-340)||(7158337-7158376)
chr6 (301-341)||(7158276-7158316)
[»] chr3 (19 HSPs)
chr3 (301-341)||(2128441-2128481)
chr3 (301-341)||(4980353-4980393)
chr3 (301-341)||(26367491-26367531)
chr3 (301-341)||(4980293-4980333)
chr3 (281-341)||(5919433-5919493)
chr3 (301-341)||(26367555-26367595)
chr3 (301-341)||(31706633-31706673)
chr3 (298-338)||(42787698-42787738)
chr3 (298-341)||(105389-105432)
chr3 (282-341)||(35572080-35572138)
chr3 (311-341)||(27707258-27707288)
chr3 (302-339)||(1086591-1086628)
chr3 (303-340)||(25645210-25645247)
chr3 (301-337)||(7981165-7981201)
chr3 (301-341)||(22496971-22497011)
chr3 (281-341)||(31706693-31706752)
chr3 (301-337)||(35572020-35572056)
chr3 (313-341)||(39836945-39836973)
chr3 (313-341)||(45819560-45819588)
[»] chr2 (15 HSPs)
chr2 (301-341)||(3123983-3124023)
chr2 (289-341)||(18356058-18356109)
chr2 (282-341)||(3123905-3123963)
chr2 (298-341)||(10221989-10222032)
chr2 (301-341)||(14308679-14308719)
chr2 (301-341)||(27881257-27881297)
chr2 (301-341)||(14308726-14308766)
chr2 (301-341)||(17866260-17866300)
chr2 (293-341)||(19515011-19515059)
chr2 (301-341)||(41824281-41824321)
chr2 (301-341)||(44274621-44274661)
chr2 (298-341)||(18356129-18356171)
chr2 (313-341)||(12242272-12242300)
chr2 (301-341)||(26836235-26836275)
chr2 (301-341)||(45035863-45035903)
[»] chr5 (19 HSPs)
chr5 (282-341)||(25408623-25408681)
chr5 (301-341)||(25408563-25408603)
chr5 (281-340)||(12750119-12750177)
chr5 (282-341)||(30780072-30780130)
chr5 (302-341)||(30893856-30893895)
chr5 (302-341)||(33652438-33652477)
chr5 (301-341)||(12750198-12750238)
chr5 (301-341)||(30780150-30780190)
chr5 (302-341)||(5777260-5777299)
chr5 (298-341)||(17967395-17967438)
chr5 (298-341)||(27895914-27895957)
chr5 (298-341)||(37067629-37067672)
chr5 (298-340)||(4082819-4082861)
chr5 (303-341)||(36895316-36895354)
chr5 (301-341)||(238806-238846)
chr5 (313-341)||(1098660-1098688)
chr5 (313-341)||(3100437-3100465)
chr5 (313-341)||(10495243-10495271)
chr5 (301-341)||(22581947-22581987)
[»] chr8 (14 HSPs)
chr8 (281-341)||(8506297-8506356)
chr8 (301-341)||(29424063-29424103)
chr8 (301-341)||(7428912-7428952)
chr8 (301-341)||(7428972-7429012)
chr8 (289-341)||(21435749-21435801)
chr8 (301-341)||(24418960-24419000)
chr8 (298-340)||(6189715-6189757)
chr8 (301-341)||(5888356-5888396)
chr8 (281-341)||(15936283-15936342)
chr8 (313-341)||(24820377-24820405)
chr8 (313-341)||(28882696-28882724)
chr8 (313-341)||(36308071-36308099)
chr8 (298-338)||(41753841-41753881)
chr8 (301-341)||(45407064-45407104)
[»] chr4 (33 HSPs)
chr4 (281-341)||(20598337-20598396)
chr4 (301-341)||(54106495-54106535)
chr4 (301-341)||(54106555-54106595)
chr4 (281-341)||(54922267-54922326)
chr4 (298-341)||(3504094-3504137)
chr4 (301-340)||(20598277-20598316)
chr4 (291-341)||(44239794-44239844)
chr4 (301-341)||(5535734-5535774)
chr4 (301-341)||(54508189-54508229)
chr4 (301-340)||(4370420-4370459)
chr4 (298-341)||(6462792-6462835)
chr4 (302-341)||(26636520-26636559)
chr4 (301-336)||(41905872-41905907)
chr4 (298-340)||(3094284-3094326)
chr4 (313-343)||(41459446-41459476)
chr4 (298-340)||(44239865-44239907)
chr4 (302-342)||(4370479-4370519)
chr4 (301-341)||(11796664-11796704)
chr4 (313-341)||(16912471-16912499)
chr4 (313-341)||(19934670-19934698)
chr4 (313-341)||(19934718-19934746)
chr4 (313-341)||(21586998-21587026)
chr4 (313-341)||(25700537-25700565)
chr4 (313-341)||(29006867-29006895)
chr4 (301-341)||(33558877-33558917)
chr4 (301-341)||(35005135-35005175)
chr4 (313-341)||(37255714-37255742)
chr4 (281-341)||(44171435-44171494)
chr4 (301-341)||(51736230-51736270)
chr4 (301-341)||(52674897-52674937)
chr4 (301-341)||(52914078-52914118)
chr4 (313-341)||(54164845-54164873)
chr4 (313-341)||(54164893-54164921)
[»] scaffold0015 (1 HSPs)
scaffold0015 (281-341)||(17315-17372)
[»] scaffold0024 (1 HSPs)
scaffold0024 (305-341)||(100051-100087)
[»] scaffold1266 (1 HSPs)
scaffold1266 (313-341)||(210-238)
[»] scaffold0149 (1 HSPs)
scaffold0149 (301-341)||(24686-24726)


Alignment Details
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 138 - 263
Target Start/End: Complemental strand, 4906781 - 4906651
Alignment:
Q  138 gtaaatctatgattgtttcccaaatagttgtgcaaat--catacttccttttaactcggatgactcaaagtcaaaactatatata---ttttgtacgatg 232  Q
    ||||||||||  ||||||| ||||||||||  |||||  |||||||||||||| |  | ||||||||||||||||||||||||||   |||| || ||||    
T  4906781 gtaaatctatagttgtttcacaaatagttgatcaaataacatacttccttttatcatgaatgactcaaagtcaaaactatatatatttttttttaggatg 4906682  T
Q  233 atattctgctaggacatttgtaaatactata 263  Q
    ||||| |||||||||||| ||||||||||||    
T  4906681 atattgtgctaggacattcgtaaatactata 4906651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 8984208 - 8984248
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  8984208 caaaaaatcatgttttagattcattcaataaatgatgtatg 8984248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 333
Target Start/End: Original strand, 1741629 - 1741661
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaat 333  Q
    |||||||||||||||||||||||||||||||||    
T  1741629 caaaaattcatgttttagattcattcaataaat 1741661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 15351835 - 15351795
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  15351835 caaaaatctatgttttagattcattcaataaatgatgtatg 15351795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 341
Target Start/End: Original strand, 10256802 - 10256841
Alignment:
Q  302 aaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  10256802 aaaaattcactttttagattcattcaataaatgatgtatg 10256841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 26937881 - 26937920
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtat 340  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  26937881 caaaaattcatattttaaattcattcaataaatgatgtat 26937920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 14958680 - 14958741
Alignment:
Q  279 tactccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||| | ||||||||  ||||| ||||  |||||||||||||||||||||||||||||    
T  14958680 tactccggtcacaaatataag-caaaacttcaaattttagattcattcaataaatgatgtatg 14958741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 1409157 - 1409129
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  1409157 ttttagattcattcaataaatgatgtatg 1409129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 5431361 - 5431401
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||  ||||||||||||||||||||||| |||||    
T  5431361 caaaaattcactttttagattcattcaataaatgaagtatg 5431401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 5431448 - 5431420
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  5431448 ttttagattcattcaataaatgatgtatg 5431420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 6079171 - 6079143
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  6079171 ttttagattcattcaataaatgatgtatg 6079143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 333
Target Start/End: Complemental strand, 7037937 - 7037905
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaat 333  Q
    ||||||| |||||||||||||||||||||||||    
T  7037937 caaaaatccatgttttagattcattcaataaat 7037905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 8984308 - 8984268
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||| | |||||||||||||||||||||||| ||||    
T  8984308 caaaaattcgtattttagattcattcaataaatgatttatg 8984268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 13048672 - 13048716
Alignment:
Q  296 taaaacaaaaattcatgttttagattcattcaataaatgatgtat 340  Q
    |||| |||||||| || ||||||||||||||||| ||||||||||    
T  13048672 taaagcaaaaattaatattttagattcattcaattaatgatgtat 13048716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 13053669 - 13053713
Alignment:
Q  296 taaaacaaaaattcatgttttagattcattcaataaatgatgtat 340  Q
    |||| |||||||| || ||||||||||||||||| ||||||||||    
T  13053669 taaagcaaaaattaatattttagattcattcaattaatgatgtat 13053713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 15351735 - 15351775
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||| || ||||| |||||||||||||||||||||||    
T  15351735 caaaaatttatattttaaattcattcaataaatgatgtatg 15351775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 19175696 - 19175668
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  19175696 ttttagattcattcaataaatgatgtatg 19175668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 19580301 - 19580273
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  19580301 ttttagattcattcaataaatgatgtatg 19580273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 23944057 - 23944097
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||| |||||||| |||||||| |||||||||||    
T  23944057 caaaaattcattttttagatacattcaattaatgatgtatg 23944097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 24807999 - 24807971
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  24807999 ttttagattcattcaataaatgatgtatg 24807971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 31325929 - 31325897
Alignment:
Q  302 aaaaattcatgttttagattcattcaataaatg 334  Q
    |||||||||| ||||||||||||||||||||||    
T  31325929 aaaaattcatattttagattcattcaataaatg 31325897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 34597540 - 34597580
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||  |||||||||||||||| ||||||||||||    
T  34597540 caaaaattcactttttagattcattcaacaaatgatgtatg 34597580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 34597633 - 34597593
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||  |||||||||||||||| ||||||||||||    
T  34597633 caaaaattcactttttagattcattcaacaaatgatgtatg 34597593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 38468687 - 38468746
Alignment:
Q  281 ctccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||| ||||||||||  | ||| || |||||||||||||||||||||||| |||||||    
T  38468687 ctccggtcataaatataag-ctaaattttatgttttagattcattcaataaataatgtatg 38468746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 44416533 - 44416592
Alignment:
Q  281 ctccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  44416533 ctccggtcataaatataaa-caaaaattcatgttttagattcattcaatgaatgatgtatg 44416592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 31417637 - 31417597
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31417637 caaaaattcatgttttagattcattcaataaatgatgtatg 31417597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 341
Target Start/End: Original strand, 29779731 - 29779774
Alignment:
Q  298 aaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||| || ||||||||||||||||||||||||||    
T  29779731 aaacaaaaattcatattatagattcattcaataaatgatgtatg 29779774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 15051203 - 15051163
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  15051203 caaaaattcatgttttaaattcattcaataaataatgtatg 15051163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 27242534 - 27242498
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatg 337  Q
    ||||||| |||||||||||||||||||||||||||||    
T  27242534 caaaaatccatgttttagattcattcaataaatgatg 27242498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 32549945 - 32549901
Alignment:
Q  297 aaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||| ||||||| || |||||||||||||||||||||||||||||    
T  32549945 aaaaaaaaaattgatattttagattcattcaataaatgatgtatg 32549901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 35216485 - 35216536
Alignment:
Q  289 ataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||| |||||||| || |||||||||||||||||||||||| ||||    
T  35216485 ataaatataaa-caaaaatttatattttagattcattcaataaatgatatatg 35216536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 341
Target Start/End: Complemental strand, 11602890 - 11602847
Alignment:
Q  298 aaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||| ||||  |||||||||||||||||||||||||||||    
T  11602890 aaacaaaagttcactttttagattcattcaataaatgatgtatg 11602847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 15051103 - 15051142
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtat 340  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  15051103 caaaaatttatgttttagatacattcaataaatgatgtat 15051142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 341
Target Start/End: Original strand, 35641495 - 35641538
Alignment:
Q  298 aaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||| || ||||| |||||||||||||||||||||||    
T  35641495 aaacaaaaatttatattttacattcattcaataaatgatgtatg 35641538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 21113235 - 21113276
Alignment:
Q  300 acaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||| | ||||||||||||||||||| |||||||    
T  21113235 acaaaaattcatttgttagattcattcaataaattatgtatg 21113276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 8169204 - 8169176
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  8169204 ttttagattcattcaataaatgatgtatg 8169176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 8595148 - 8595207
Alignment:
Q  281 ctccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||| | |||||||| | ||||||| || ||||||||||||||| |||||||||||||    
T  8595148 ctccggtcacaaatataaga-aaaaatttattttttagattcattcattaaatgatgtatg 8595207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 14995985 - 14995949
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatg 337  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  14995985 caaaaattcatattttagattcgttcaataaatgatg 14995949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 18820039 - 18820011
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  18820039 ttttagattcattcaataaatgatgtatg 18820011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 22752564 - 22752619
Alignment:
Q  284 cggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtat 340  Q
    |||| ||||||||||  |||||||| || ||||||||||||||||||||| ||||||    
T  22752564 cggtcataaatataag-caaaaatttatattttagattcattcaataaataatgtat 22752619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 22752699 - 22752640
Alignment:
Q  281 ctccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||| |||||||| | ||||||  | |||||||||||||||||||||| |||||||    
T  22752699 ctccggttacaaatataaga-aaaaatataggttttagattcattcaataaattatgtatg 22752640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 28409604 - 28409632
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  28409604 ttttagattcattcaataaatgatgtatg 28409632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 32599695 - 32599723
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  32599695 ttttagattcattcaataaatgatgtatg 32599723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 34840646 - 34840674
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  34840646 ttttagattcattcaataaatgatgtatg 34840674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 44416663 - 44416612
Alignment:
Q  289 ataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||| |||||||| || ||||||||||||||||| ||| |||||||    
T  44416663 ataaatataaa-caaaaatttatattttagattcattcaattaattatgtatg 44416612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 47535078 - 47535050
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  47535078 ttttagattcattcaataaatgatgtatg 47535050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 3012480 - 3012440
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3012480 caaaaattcatgttttagattcattcaataaatgatgtatg 3012440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 13276506 - 13276546
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  13276506 caaaaattcatgttttaggttcattcaataaatgatgtatg 13276546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 13277161 - 13277102
Alignment:
Q  281 ctccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||| | ||||||||| |||||||| || |||||||||||||||||||||||||||||    
T  13277161 ctccggtcacaaatataaa-caaaaatttatattttagattcattcaataaatgatgtatg 13277102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 15836541 - 15836599
Alignment:
Q  282 tccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||| ||||||||||  ||||||||||| || ||||||||||||||||||||||||||    
T  15836541 tccggtcataaatataag-caaaaattcatattgtagattcattcaataaatgatgtatg 15836599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 341
Target Start/End: Complemental strand, 15836658 - 15836619
Alignment:
Q  302 aaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  15836658 aaaaatacatgttttagattcattcaataaatgatgtatg 15836619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 341
Target Start/End: Complemental strand, 33053883 - 33053845
Alignment:
Q  303 aaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  33053883 aaaattcatgttttagatacattcaataaatgatgtatg 33053845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 33053766 - 33053825
Alignment:
Q  281 ctccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||| | |||||||| | ||||||  ||||||||||||||||||||||||||||||||    
T  33053766 ctccggtcacaaatataaga-aaaaatctatgttttagattcattcaataaatgatgtatg 33053825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 7158376 - 7158337
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtat 340  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  7158376 caaaagttcatattttagattcattcaataaatgatgtat 7158337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 7158276 - 7158316
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||  |||||||||||| |||||||||||||||||||    
T  7158276 caaaaatctatgttttagatttattcaataaatgatgtatg 7158316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 2128481 - 2128441
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2128481 caaaaattcatgttttagattcattcaataaatgatgtatg 2128441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 4980393 - 4980353
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  4980393 caaaaattcatattttagattcattcaataaatgatgtatg 4980353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 26367491 - 26367531
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  26367491 caaaaatccatgttttagattcattcaataaatgatgtatg 26367531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 4980293 - 4980333
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  4980293 caaaaattcatattttagattcattcaataaatgatatatg 4980333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 5919433 - 5919493
Alignment:
Q  281 ctccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||| | ||||||||   |||||||| | |||||||||||||||||||||||||||||    
T  5919433 ctccggtcacaaatataagcaaaaaattcgtattttagattcattcaataaatgatgtatg 5919493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 26367595 - 26367555
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  26367595 caaaaatcaatgttttagattcattcaataaatgatgtatg 26367555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 31706633 - 31706673
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  31706633 caaaaattcatattttagattcattcaatatatgatgtatg 31706673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 42787738 - 42787698
Alignment:
Q  298 aaacaaaaattcatgttttagattcattcaataaatgatgt 338  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  42787738 aaacaaaaattcattttttaggttcattcaataaatgatgt 42787698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 341
Target Start/End: Original strand, 105389 - 105432
Alignment:
Q  298 aaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||  ||||||||||||| |||||||||||||||    
T  105389 aaacaaaaattcactttttagattcattgaataaatgatgtatg 105432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 341
Target Start/End: Complemental strand, 35572138 - 35572080
Alignment:
Q  282 tccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||| ||||||||||  |||||||||||||||| | ||||||||||||||| ||||||    
T  35572138 tccggtcataaatataag-caaaaattcatgttttgggttcattcaataaatgttgtatg 35572080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 341
Target Start/End: Complemental strand, 27707288 - 27707258
Alignment:
Q  311 tgttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||||    
T  27707288 tgttttagattcattcaataaatgatgtatg 27707258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 1086628 - 1086591
Alignment:
Q  302 aaaaattcatgttttagattcattcaataaatgatgta 339  Q
    |||||||||  |||||||||||||||||||||||||||    
T  1086628 aaaaattcactttttagattcattcaataaatgatgta 1086591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 340
Target Start/End: Original strand, 25645210 - 25645247
Alignment:
Q  303 aaaattcatgttttagattcattcaataaatgatgtat 340  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  25645210 aaaattcaatttttagattcattcaataaatgatgtat 25645247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 7981165 - 7981201
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatg 337  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  7981165 caaaaattcatattttaggttcattcaataaatgatg 7981201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 22496971 - 22497011
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||| || ||||||||||||||| |||||||||||||    
T  22496971 caaaaattaatattttagattcattcattaaatgatgtatg 22497011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 31706752 - 31706693
Alignment:
Q  281 ctccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||| ||||||||  |||||| || ||||||||||| |||||||||| ||||||||    
T  31706752 ctccggttacaaatataag-caaaaaatcttgttttagatttattcaataaacgatgtatg 31706693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 35572020 - 35572056
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatg 337  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  35572020 caaaaattcatattttagattcattcaataaacgatg 35572056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 39836973 - 39836945
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  39836973 ttttagattcattcaataaatgatgtatg 39836945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 45819560 - 45819588
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  45819560 ttttagattcattcaataaatgatgtatg 45819588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 3124023 - 3123983
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3124023 caaaaattcatgttttagattcattcaataaatgatgtatg 3123983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 18356058 - 18356109
Alignment:
Q  289 ataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  18356058 ataaatataaa-caaaatttcatgttttagattcattcaataaatgatgtatg 18356109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 3123905 - 3123963
Alignment:
Q  282 tccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||    
T  3123905 tccggtcataaatataaa-caaaagttcatattttagattcattcaataaatgatgtatg 3123963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 341
Target Start/End: Original strand, 10221989 - 10222032
Alignment:
Q  298 aaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  10221989 aaacaaaaattcatgttttatattcattcaataaatgatgtatg 10222032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 14308679 - 14308719
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  14308679 caaacattcatgttttagattcattcaataaatgatgtatg 14308719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 27881257 - 27881297
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  27881257 caaaaattcatgttttatattcattcaataaatgatgtatg 27881297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 14308766 - 14308726
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  14308766 caaaaaatcatattttagattcattcaataaatgatgtatg 14308726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 17866300 - 17866260
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  17866300 caaaaatccatgttttagattcattcaataaattatgtatg 17866260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 19515011 - 19515059
Alignment:
Q  293 atataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||| ||||| |||| |||||||||||||||| ||||||||||||    
T  19515011 atataaaaaaaaaaatcattttttagattcattcaacaaatgatgtatg 19515059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 41824281 - 41824321
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  41824281 caaaaattcattttttagattcattcaataaattatgtatg 41824321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 44274661 - 44274621
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||  |||||||||||||||||||||||||||||    
T  44274661 caaaaattcactttttagattcattcaataaatgatgtatg 44274621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 341
Target Start/End: Complemental strand, 18356171 - 18356129
Alignment:
Q  298 aaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||| ||||| |||||||||||||||||    
T  18356171 aaacaaaaattcatgttttaaattca-tcaataaatgatgtatg 18356129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 12242272 - 12242300
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  12242272 ttttagattcattcaataaatgatgtatg 12242300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 26836275 - 26836235
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||| ||| |||||||||||||||||||||||| ||||    
T  26836275 caaaaatccatattttagattcattcaataaatgatttatg 26836235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 45035903 - 45035863
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||  |||||||||||||| |||||||||||||||||    
T  45035903 caaaaatatatgttttagattcactcaataaatgatgtatg 45035863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 341
Target Start/End: Complemental strand, 25408681 - 25408623
Alignment:
Q  282 tccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||| ||||||||||  |||||||| ||||||||||||||||||||||||||||||||    
T  25408681 tccggtcataaatataag-caaaaatttatgttttagattcattcaataaatgatgtatg 25408623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 25408563 - 25408603
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  25408563 caaaaattcatattttagattcattcaataaatgatgtatg 25408603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 340
Target Start/End: Original strand, 12750119 - 12750177
Alignment:
Q  281 ctccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtat 340  Q
    ||||||| | ||||||||| |||||||| ||||||||||| |||||||||||||||||||    
T  12750119 ctccggtcacaaatataaa-caaaaatttatgttttagatacattcaataaatgatgtat 12750177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 30780072 - 30780130
Alignment:
Q  282 tccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||  ||||||||||| ||||| ||| |||||||||||||||||||    
T  30780072 tccggttataaatataag-caaaaattcatattttaaatttattcaataaatgatgtatg 30780130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 341
Target Start/End: Complemental strand, 30893895 - 30893856
Alignment:
Q  302 aaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  30893895 aaaaatccatgttttagattcattcaataaatgatgtatg 30893856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 341
Target Start/End: Original strand, 33652438 - 33652477
Alignment:
Q  302 aaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  33652438 aaaaattcatgttttagatccattcaataaatgatgtatg 33652477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 12750238 - 12750198
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  12750238 caaaaattcatgttttaaattcattcaataaataatgtatg 12750198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 30780190 - 30780150
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  30780190 caaaaatttatgttttaaattcattcaataaatgatgtatg 30780150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 341
Target Start/End: Complemental strand, 5777299 - 5777260
Alignment:
Q  302 aaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  5777299 aaaaattcatattttacattcattcaataaatgatgtatg 5777260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 341
Target Start/End: Complemental strand, 17967438 - 17967395
Alignment:
Q  298 aaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||| || ||||| |||||||||||||||||||||||    
T  17967438 aaacaaaaattgatattttatattcattcaataaatgatgtatg 17967395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 341
Target Start/End: Original strand, 27895914 - 27895957
Alignment:
Q  298 aaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||| ||||| ||||||||||||| |||||||||||||||    
T  27895914 aaacaaaagttcattttttagattcatttaataaatgatgtatg 27895957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 341
Target Start/End: Original strand, 37067629 - 37067672
Alignment:
Q  298 aaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||| || ||||||||||||||| |||||||||||||    
T  37067629 aaacaaaaattaatattttagattcattcattaaatgatgtatg 37067672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 4082861 - 4082819
Alignment:
Q  298 aaacaaaaattcatgttttagattcattcaataaatgatgtat 340  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  4082861 aaacaaaaattcacattttagatttattcaataaatgatgtat 4082819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 341
Target Start/End: Complemental strand, 36895354 - 36895316
Alignment:
Q  303 aaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  36895354 aaaatacatattttagattcattcaataaatgatgtatg 36895316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 238846 - 238806
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||| ||||| ||||||| |||||||||||||||    
T  238846 caaaaattcattttttatattcattgaataaatgatgtatg 238806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 1098660 - 1098688
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  1098660 ttttagattcattcaataaatgatgtatg 1098688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 3100437 - 3100465
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  3100437 ttttagattcattcaataaatgatgtatg 3100465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 10495243 - 10495271
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  10495243 ttttagattcattcaataaatgatgtatg 10495271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 22581947 - 22581987
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||| ||||||||||||| ||||||| |||||||    
T  22581947 caaaaattcatattttagattcatttaataaattatgtatg 22581987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 8506356 - 8506297
Alignment:
Q  281 ctccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||| | ||||||||| |||||||| |||||||||||||||||||||||| |||||||    
T  8506356 ctccggtcacaaatataaa-caaaaatttatgttttagattcattcaataaataatgtatg 8506297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 29424103 - 29424063
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  29424103 caaaaattcatattttagattcattcaataaatgatgtatg 29424063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 7428912 - 7428952
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  7428912 caaaaattcatattttaggttcattcaataaatgatgtatg 7428952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 7429012 - 7428972
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  7429012 caaaaatttatattttagattcattcaataaatgatgtatg 7428972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 21435801 - 21435749
Alignment:
Q  289 ataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||   |||| ||||| |||||||||||||||||||||||||||||    
T  21435801 ataaatataagcaaaaagttcatattttagattcattcaataaatgatgtatg 21435749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 24419000 - 24418960
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||  |||||||||||||||||||||||||||||    
T  24419000 caaaaattcactttttagattcattcaataaatgatgtatg 24418960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 6189757 - 6189715
Alignment:
Q  298 aaacaaaaattcatgttttagattcattcaataaatgatgtat 340  Q
    ||||||||||  | |||||||||||||||||||||||||||||    
T  6189757 aaacaaaaatcaacgttttagattcattcaataaatgatgtat 6189715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 5888356 - 5888396
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||| | |||||||||||||||| |||||||||||||    
T  5888356 caaaaattaacgttttagattcattcattaaatgatgtatg 5888396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 15936342 - 15936283
Alignment:
Q  281 ctccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||| ||||||||  |||||||||||||||||  || ||||| |||||||||||||    
T  15936342 ctccggttacaaatataag-caaaaattcatgttttaagttgattcagtaaatgatgtatg 15936283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 24820405 - 24820377
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  24820405 ttttagattcattcaataaatgatgtatg 24820377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 28882696 - 28882724
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  28882696 ttttagattcattcaataaatgatgtatg 28882724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 36308099 - 36308071
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  36308099 ttttagattcattcaataaatgatgtatg 36308071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 41753881 - 41753841
Alignment:
Q  298 aaacaaaaattcatgttttagattcattcaataaatgatgt 338  Q
    ||||||||||| || ||||||||||||||||| ||||||||    
T  41753881 aaacaaaaattaatattttagattcattcaattaatgatgt 41753841  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 45407104 - 45407064
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||| ||||||||| ||| |||||||||||||||||||    
T  45407104 caaaaatccatgttttaaattaattcaataaatgatgtatg 45407064  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 20598396 - 20598337
Alignment:
Q  281 ctccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||| | ||||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  20598396 ctccggtcacaaatataaa-caaaaatccatgttttagattcattcaataaatgatatatg 20598337  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 54106495 - 54106535
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  54106495 caaaaattcatattttagattcattcaataaatgatgtatg 54106535  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 54106595 - 54106555
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  54106595 caaaaatttatgttttagattcattcaataaatgatgtatg 54106555  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 54922267 - 54922326
Alignment:
Q  281 ctccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||| | |||||||||| |||||||| |||||||||||| |||||||    
T  54922267 ctccggttataaatataaga-aaaaattcatattttagatacattcaataaataatgtatg 54922326  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 341
Target Start/End: Original strand, 3504094 - 3504137
Alignment:
Q  298 aaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||| ||||||||||||||||| |||||||||||    
T  3504094 aaacaaaaattcattttttagattcattcaattaatgatgtatg 3504137  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 20598277 - 20598316
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtat 340  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  20598277 caaaaattcatgttttagatacattcaataaatgatgtat 20598316  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 44239794 - 44239844
Alignment:
Q  291 aaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||||||||||||| ||||||||| ||| |||||||||| ||||    
T  44239794 aaatataaaacaaaaattcatattttagattaatttaataaatgatatatg 44239844  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 5535734 - 5535774
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  5535734 caaaaactcattttttagattcattcaataaatgatgtatg 5535774  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 54508189 - 54508229
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  54508189 caaaaatttatattttagattcattcaataaatgatgtatg 54508229  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 4370420 - 4370459
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtat 340  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  4370420 caaaaatccatattttagattcattcaataaatgatgtat 4370459  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 341
Target Start/End: Complemental strand, 6462835 - 6462792
Alignment:
Q  298 aaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||| || || |||||||||||||||||||||||||||||    
T  6462835 aaacaaaattttattttttagattcattcaataaatgatgtatg 6462792  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 341
Target Start/End: Complemental strand, 26636559 - 26636520
Alignment:
Q  302 aaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  26636559 aaaaatttattttttagattcattcaataaatgatgtatg 26636520  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 336
Target Start/End: Complemental strand, 41905907 - 41905872
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgat 336  Q
    |||||||||||||||||| |||||||||||||||||    
T  41905907 caaaaattcatgttttaggttcattcaataaatgat 41905872  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 3094284 - 3094326
Alignment:
Q  298 aaacaaaaattcatgttttagattcattcaataaatgatgtat 340  Q
    ||||||||||| || ||||| ||||||||||||||||||||||    
T  3094284 aaacaaaaatttattttttatattcattcaataaatgatgtat 3094326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 343
Target Start/End: Original strand, 41459446 - 41459476
Alignment:
Q  313 ttttagattcattcaataaatgatgtatgag 343  Q
    |||||||||||||||||||||||||||||||    
T  41459446 ttttagattcattcaataaatgatgtatgag 41459476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 44239907 - 44239865
Alignment:
Q  298 aaacaaaaattcatgttttagattcattcaataaatgatgtat 340  Q
    ||||||||||| |||||||| |||||| |||||||||||||||    
T  44239907 aaacaaaaatttatgttttaaattcatccaataaatgatgtat 44239865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 4370519 - 4370479
Alignment:
Q  302 aaaaattcatgttttagattcattcaataaatgatgtatga 342  Q
    |||||||||| ||||||||| || |||||||||||||||||    
T  4370519 aaaaattcatattttagatttatgcaataaatgatgtatga 4370479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 11796704 - 11796664
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||  ||||||||| |||||||||||||||||||    
T  11796704 caaaaattcactttttagatttattcaataaatgatgtatg 11796664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 16912471 - 16912499
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  16912471 ttttagattcattcaataaatgatgtatg 16912499  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 19934670 - 19934698
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  19934670 ttttagattcattcaataaatgatgtatg 19934698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 19934746 - 19934718
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  19934746 ttttagattcattcaataaatgatgtatg 19934718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 21587026 - 21586998
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  21587026 ttttagattcattcaataaatgatgtatg 21586998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 25700565 - 25700537
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  25700565 ttttagattcattcaataaatgatgtatg 25700537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 29006867 - 29006895
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  29006867 ttttagattcattcaataaatgatgtatg 29006895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 33558917 - 33558877
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||  |||||||||||| |||||||||||||||||||    
T  33558917 caaaaatatatgttttagatttattcaataaatgatgtatg 33558877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 35005175 - 35005135
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||  ||||||||||||||||||||| |||||||    
T  35005175 caaaaattcaatttttagattcattcaataaataatgtatg 35005135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 37255714 - 37255742
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  37255714 ttttagattcattcaataaatgatgtatg 37255742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 44171435 - 44171494
Alignment:
Q  281 ctccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||||| | |||||| ||||| || || ||||| |||||||||||||||||||||||    
T  44171435 ctccggttattattataaa-caaaagttaattttttaaattcattcaataaatgatgtatg 44171494  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 51736230 - 51736270
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||| || | |||||||||||||||||||||||||||    
T  51736230 caaaaattaatatattagattcattcaataaatgatgtatg 51736270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 52674937 - 52674897
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||  ||||||||||||||||||||||||||| ||||    
T  52674937 caaaaatgtatgttttagattcattcaataaatgatttatg 52674897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 52914118 - 52914078
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||| || ||||||||||||||| |||||||||||||    
T  52914118 caaaaattaatattttagattcattcattaaatgatgtatg 52914078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 54164845 - 54164873
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  54164845 ttttagattcattcaataaatgatgtatg 54164873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 54164921 - 54164893
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  54164921 ttttagattcattcaataaatgatgtatg 54164893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 17372 - 17315
Alignment:
Q  281 ctccggttataaatataaaacaaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||| ||||||||  |||||||  ||||||||||||||||||||||||||||||||    
T  17372 ctccggttacaaatataag-caaaaat--atgttttagattcattcaataaatgatgtatg 17315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 341
Target Start/End: Complemental strand, 100087 - 100051
Alignment:
Q  305 aattcatgttttagattcattcaataaatgatgtatg 341  Q
    ||||||||||||| |||||||||||||||||||||||    
T  100087 aattcatgttttaaattcattcaataaatgatgtatg 100051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 238 - 210
Alignment:
Q  313 ttttagattcattcaataaatgatgtatg 341  Q
    |||||||||||||||||||||||||||||    
T  238 ttttagattcattcaataaatgatgtatg 210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 24726 - 24686
Alignment:
Q  301 caaaaattcatgttttagattcattcaataaatgatgtatg 341  Q
    |||||||| || ||||||||||||||| |||||||||||||    
T  24726 caaaaattaatattttagattcattcattaaatgatgtatg 24686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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