View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5120_low_6 (Length: 295)
Name: NF5120_low_6
Description: NF5120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5120_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 67 - 279
Target Start/End: Original strand, 5932228 - 5932444
Alignment:
| Q |
67 |
tttagacgaaataatctacaatctaaacaaatcaaacattctctataaaataatacacgtggtatgatttaggtcttattctaatttaatgtttttccaa |
166 |
Q |
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| T |
5932228 |
tttagacgaaataatatacaatctaaacaaatcaaacattctctataaaataatacacgtggtatgatttaggtcttattctaatttaatgtttttccaa |
5932327 |
T |
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| Q |
167 |
ttcaaagttatttactaatcctacgtaacaagtcaatgact----tatattctttcnnnnnnnnnnnnnnnngtcaatgacttatatgacaacttttaat |
262 |
Q |
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| T |
5932328 |
ttcaaagttatttactaatcctacgtaccaagtcaatgacttatatatattctttcaaaaacaaaaacaaaagtcaatgacttatatgacaactttcaat |
5932427 |
T |
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| Q |
263 |
atcacattaattcagac |
279 |
Q |
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| T |
5932428 |
atcacattaattcagac |
5932444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 1521662 - 1521613
Alignment:
| Q |
79 |
aatctacaatctaaacaaatcaaacattctctataaaataatacacgtgg |
128 |
Q |
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| T |
1521662 |
aatctacaatctaaacaaatccaactttctctataaaatagtacatgtgg |
1521613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 4233564 - 4233608
Alignment:
| Q |
80 |
atctacaatctaaacaaatcaaacattctctataaaataatacac |
124 |
Q |
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| T |
4233564 |
atctacaatataaacaattcaaacattctctataaaatagtacac |
4233608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 38008570 - 38008630
Alignment:
| Q |
111 |
ataaaataatacacgtggtatgatttaggtcttattctaatttaatgtttttccaattcaa |
171 |
Q |
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| T |
38008570 |
ataaaatagtacacgtcgcatgttttaggcctaattataatttaatgttttttcaattcaa |
38008630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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