View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5120_low_9 (Length: 243)
Name: NF5120_low_9
Description: NF5120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5120_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 48593501 - 48593738
Alignment:
| Q |
1 |
tgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattcca |
100 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593501 |
tgattcggaatgtaagatcttagatcaaggcaaaaaaattgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattcca |
48593600 |
T |
|
| Q |
101 |
gttgcaagattgaacccccttacatttcttcaactttaataaaagggaatttgtgataaattaagtagtgcaattgttgtttatgtctttctctattcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
48593601 |
gttgcaagattgaacccccttacatttcttcaactttagtaaaagggaatttgtgata----aagtagtgcaattgttgtttatgtctttctctattcac |
48593696 |
T |
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| Q |
201 |
aatcttaagcccttgctctcctatttctctttacttcatctc |
242 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
48593697 |
aatcttaagcccttgctcttctatttctctttacttcttctc |
48593738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 48598112 - 48598349
Alignment:
| Q |
1 |
tgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattcca |
100 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48598112 |
tgattcggaatgtaagatcttagatcaaggcaaaaaaattgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattcca |
48598211 |
T |
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| Q |
101 |
gttgcaagattgaacccccttacatttcttcaactttaataaaagggaatttgtgataaattaagtagtgcaattgttgtttatgtctttctctattcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
48598212 |
gttgcaagattgaacccccttacatttcttcaactttagtaaaagggaatttgtgata----aagtagtgcaattgttgtttatgtctttctctattcac |
48598307 |
T |
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| Q |
201 |
aatcttaagcccttgctctcctatttctctttacttcatctc |
242 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
48598308 |
aatcttaagcccttgctcttctatttctctttacttcttctc |
48598349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 23222963 - 23222890
Alignment:
| Q |
41 |
gatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| |
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| T |
23222963 |
gatatggatgaacggcctggattgactgctcctagagccaatgatcttttttgcattccagttgcaagattgaa |
23222890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 23230708 - 23230593
Alignment:
| Q |
41 |
gatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttaat |
140 |
Q |
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|||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||| || ||||| ||||||| ||| |||||||| |||| | |
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| T |
23230708 |
gatatggatgaaagacctggattgaccgctcctagagccaatgatcttatttgtattccgatttcaagaatgaacccaaatacttttcttcagcttttgt |
23230609 |
T |
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| Q |
141 |
aaaagggaatttgtga |
156 |
Q |
| |
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|||||||||||||||| |
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| T |
23230608 |
aaaagggaatttgtga |
23230593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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