View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5121-Insertion-10 (Length: 295)
Name: NF5121-Insertion-10
Description: NF5121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5121-Insertion-10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 25 - 295
Target Start/End: Original strand, 6146518 - 6146788
Alignment:
| Q |
25 |
ttttcaatttgaataatagtaatttaaaatcattaatgaaatacttacttgagtttcttggtatgagccaaaagtcttccattattcccctcagccttag |
124 |
Q |
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| T |
6146518 |
ttttcaatttgaataatagtaatctaaaatcattaatgaaatacttacttgagtttcttggtatgagccaaaagtcttccattattcccctcagccttag |
6146617 |
T |
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| Q |
125 |
aaacttcatacaattgagttggattagaaggataaggaagctttctcttagaaattgcagcaacaataacttgcaacattggagccaaagggcttccatt |
224 |
Q |
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| T |
6146618 |
aaacttcatacaattgagttggattagaaggataaggaagctttctcttagaaattgctgcaacaataacttgcaacattggagtcaaagggcttccatt |
6146717 |
T |
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| Q |
225 |
tggtatcctataacgataaaatttgcttccaatcacaaaaataagcaaagagaaagtcataacacatgtga |
295 |
Q |
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| T |
6146718 |
tggtatcctataacgataaaatttgcttccaatcacaaaaataagcaaagagaaagtcataacacatgtga |
6146788 |
T |
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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 120 - 245
Target Start/End: Original strand, 23693730 - 23693855
Alignment:
| Q |
120 |
cttagaaacttcatacaattgagttggattagaaggataaggaagctttctcttagaaattgcagcaacaataacttgcaacattggagccaaagggctt |
219 |
Q |
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| T |
23693730 |
cttagaaacctcatacaattgatcaggattagaaggataaggaagcttccttttagaaaaggcagcaacaagaacttgcaacattggagtcaaaggactc |
23693829 |
T |
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| Q |
220 |
ccatttggtatcctataacgataaaa |
245 |
Q |
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| T |
23693830 |
ccacttggtaccctataacgataaaa |
23693855 |
T |
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