View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5121-Insertion-3 (Length: 658)
Name: NF5121-Insertion-3
Description: NF5121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5121-Insertion-3 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 79 - 658
Target Start/End: Complemental strand, 36844156 - 36843577
Alignment:
| Q |
79 |
gaatgatagctataaggagagaaacagataaattaacaggatgaaaattgatgaaacaaatgttgccaatactagtaaaatataagcagacgcatctgca |
178 |
Q |
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| T |
36844156 |
gaatgataactataaggagagaaacagataaattaacaggatgaaaattgatgaaacaaatgttgccaatactagtacaatataagcagacacatctgca |
36844057 |
T |
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| Q |
179 |
catattatcatctaattataagagacatttttctgtatttgatataataaatgaatgtttgtatgtcaatgaaccaaacctgccnnnnnnnntaataaat |
278 |
Q |
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| T |
36844056 |
catattatcatctaattataagagacatttttctgcatttgatataataaatgaatgtttgtatgtcaatgaaccaaacctgccaaaaaaaataaaaaat |
36843957 |
T |
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| Q |
279 |
aacttacctcatcaaaatcagcaaaaatgtgtgaaaattcagtcatgagccaaacctgctaaaagaataaaaggtagttaaataaacaatgcacctctgg |
378 |
Q |
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| T |
36843956 |
aacttacctcatcaaaatcagcaaaaatgtgtgaaaattcagtcatgagccaaacctgccaaaagaataaaaggtagttaaataaacaatgcacctctgg |
36843857 |
T |
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| Q |
379 |
acgactctaaaacaataatgaagtcacaacaaacaaccatagaattttagatgaaaataaacattgggaagtaagtcatccatgaattgaaacattatgt |
478 |
Q |
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| T |
36843856 |
atgactctgaaacaataatgaagtcacaacaaacaaccatagaattttagatgaaaataaacattgggaagtaagtcatccatgaattgaaacattatgt |
36843757 |
T |
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| Q |
479 |
tccagaaaacatgcaaaatcagaagtgaaacgtatagcaattcaaatggagcattaattaccattgctgaaaggcattgcaagcttgaggctctcaaaca |
578 |
Q |
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| T |
36843756 |
tccagaaaacatgcaaaatcagaagtgaaacgtatagcaattcaaatggagcactaattaccattgctgaaaggcattgcaagcttgaggccctcaaaca |
36843657 |
T |
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| Q |
579 |
gcggttttcatgagtttcaccaggctcctgtgatagcatgcatactttcctcaccaatttctcaatgttatgagtgtaag |
658 |
Q |
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| T |
36843656 |
gccgttttcatgagtttcaccaggctcctgtgatagcatgcatactttcctcaccaatttctcaatgttatgagtgtaag |
36843577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 472 - 658
Target Start/End: Original strand, 37512480 - 37512666
Alignment:
| Q |
472 |
attatgttccagaaaacatgcaaaatcagaagtgaaacgtatagcaattcaaatggagcattaattaccattgctgaaaggcattgcaagcttgaggctc |
571 |
Q |
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| T |
37512480 |
attatgttccagaaaacatgcaaatttggaagtgaaacgcataacaattcaaatggagcactagttaccattgctgaaaggcattgcaagcttgaggccc |
37512579 |
T |
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| Q |
572 |
tcaaacagcggttttcatgagtttcaccaggctcctgtgatagcatgcatactttcctcaccaatttctcaatgttatgagtgtaag |
658 |
Q |
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| T |
37512580 |
tcaaacagcggttttcatgtgtttcacctggctcctgtgatagcatgcatactttcctcaccaatttctcaatgttatgagtgtaag |
37512666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 276 - 454
Target Start/End: Original strand, 37512024 - 37512186
Alignment:
| Q |
276 |
aataacttacctcatcaaaatcagcaaaaatgtgtgaaaattcagtcatgagccaaacctgctaaaagaataaaaggtagttaaataaacaatgcacctc |
375 |
Q |
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| T |
37512024 |
aataacttacctcatcaaaatcagcaaaaatgtgtgaaaattcagtcatgaaccaaacctgccaaaa----aaaaggtagttaaataaacaatgcac--- |
37512116 |
T |
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| Q |
376 |
tggacgactctaaaacaataatgaagtcacaacaaacaaccatagaattttagatgaaaataaacattgggaagtaagt |
454 |
Q |
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| T |
37512117 |
---------ctgaaacgataatgaagtcacaacaaacaaccacaaaattttacatgaaaataaacattggaaagtaagt |
37512186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 18929878 - 18929772
Alignment:
| Q |
79 |
gaatgatagctataaggagagaaacagataaattaac-aggatgaaaattgatgaaacaaatgttgccaatactagtaaaatataagcagacgcatctgc |
177 |
Q |
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| T |
18929878 |
gaatgataactataaggagagaaacggataaatttacaaggatgaaaattgatgaacgaagtgttgccaacactcgtaaa--ataagcaaacgcatctgc |
18929781 |
T |
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| Q |
178 |
acatattat |
186 |
Q |
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| T |
18929780 |
acatattat |
18929772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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