View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5121-Insertion-6 (Length: 440)
Name: NF5121-Insertion-6
Description: NF5121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5121-Insertion-6 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 154 - 439
Target Start/End: Complemental strand, 46890053 - 46889769
Alignment:
| Q |
154 |
gggttgaaatcattctttccaaagtgctcgttttagatcttccattagacacaaacaagtcggctagagattttgatgcatatatttaagactaaattca |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46890053 |
gggttgaaatcattctttccaaagtgctcgttttagatcttccattagacacaaacaaatcggctagagattttgatgcatatattta-gactaaattca |
46889955 |
T |
|
| Q |
254 |
tgtcaatttgtggtttatttaccctttaatgaatgagaaggaataagacaatcaagctgtaaatatcacttcctctgatccaatctctttcttggtctat |
353 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46889954 |
tgtcaatttgtggtttatataccctttaatgaatgagatggaataagacaatcaagctgtaaatatcacttcctctgatccaatctctttcttggtctat |
46889855 |
T |
|
| Q |
354 |
ttcaaaattccgattgtttgccacaagcgctttaagtaaatttagggctaatcttcctagaaatattaattcatacaataaacaac |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46889854 |
ttcaaaattccgattgtttgccacaagcgctttaagtaaatttagggctaatcttcctagaaatattaattcatacaataaacaac |
46889769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 46890229 - 46890128
Alignment:
| Q |
30 |
taacaacttacatcacatcttagccattaaatactaatccaacgacttatatttgtcaaattaaaaatgagacacatgcaatttcctctcctccttcttc |
129 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
46890229 |
taacaacttacatcaaatcttagccattaaatactaatccaacgacttatattcgtcaaattaaaagtgagacacatgcaattgcctctcctccttcttc |
46890130 |
T |
|
| Q |
130 |
tt |
131 |
Q |
| |
|
|| |
|
|
| T |
46890129 |
tt |
46890128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 154 - 440
Target Start/End: Original strand, 35996359 - 35996644
Alignment:
| Q |
154 |
gggttgaaatcattctttccaaagtgctcgttttagatcttccattagacacaaacaagtcggctagagattttgatgcatatatttaagactaaattca |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35996359 |
gggttgaaatcattctttccaaagtgctcgttttagatcttccattagacacaaacaaatcggctagagattttgatgcatatattta-gactaaattca |
35996457 |
T |
|
| Q |
254 |
tgtcaatttgtggtttatttaccctttaatgaatgagaaggaataagacaatcaagctgtaaatatcacttcctctgatccaatctctttcttggtctat |
353 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35996458 |
tgtcaatttgtggtttatttacccgttaatgaatgagatggaataagacaatcaagctgtaaatatcacttcctctgatccaatctctttcttggtctat |
35996557 |
T |
|
| Q |
354 |
ttcaaaattccgattgtttgccacaagcgctttaagtaaatttagggctaatcttcctagaaatattaattcatacaataaacaaca |
440 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35996558 |
ttcaaaattgagattgtttgccaccagcgctttaagtaaatttagggctaatcttcctagaaatattaattcatacaataaacaaca |
35996644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 35996162 - 35996283
Alignment:
| Q |
23 |
gtaagtgtaacaacttacatcacatcttagccattaaat---actaatccaacgacttatatttgtcaaatt----------aaaaatgagacacatgca |
109 |
Q |
| |
|
|||||| ||||||| |||| || |||||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||||||||||| |
|
|
| T |
35996162 |
gtaagtctaacaacctacaccaaatcttagccattaaattaaactaatccaacgacttatatttgacaaattaaaaggaatcaaaagtgagacacatgca |
35996261 |
T |
|
| Q |
110 |
atttcctctcctccttcttctt |
131 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
35996262 |
attccctctcctccttcttctt |
35996283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 377
Target Start/End: Original strand, 5566727 - 5566826
Alignment:
| Q |
278 |
tttaatgaatgagaaggaataagacaatcaagctgtaaatatcacttcctctgatccaatctctttcttggtctatttcaaaattccgattgtttgccac |
377 |
Q |
| |
|
|||||| |||| || || |||||||| ||||| ||||||||||| | |||||||||||| ||||||||||| | ||| ||||||| |||| |||||||| |
|
|
| T |
5566727 |
tttaatcaatgggatggcataagacagtcaagatgtaaatatcaatgcctctgatccaacctctttcttggcatctttaaaaattcggattatttgccac |
5566826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University