View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5121-Insertion-7 (Length: 291)

Name: NF5121-Insertion-7
Description: NF5121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5121-Insertion-7
NF5121-Insertion-7
[»] chr7 (5 HSPs)
chr7 (43-288)||(5676819-5677064)
chr7 (43-288)||(5701871-5702116)
chr7 (104-287)||(11951403-11951586)
chr7 (7-48)||(5676767-5676808)
chr7 (7-48)||(5701819-5701860)
[»] chr1 (3 HSPs)
chr1 (7-180)||(10152235-10152408)
chr1 (236-281)||(19264952-19264997)
chr1 (200-272)||(20806164-20806235)
[»] scaffold0065 (1 HSPs)
scaffold0065 (191-291)||(62449-62549)
[»] chr6 (2 HSPs)
chr6 (103-167)||(26278309-26278373)
chr6 (103-157)||(13236459-13236513)
[»] chr8 (1 HSPs)
chr8 (202-279)||(22451469-22451546)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 43 - 288
Target Start/End: Original strand, 5676819 - 5677064
Alignment:
Q  43 ttgaatgatgcgattattaagtgaagataatgtatatggctaattatgttttatttatgttatctctttgagtctactcattatatttgtgcatccatat 142  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  5676819 ttgaatgatgcgattattaaatgaagataatgtatatggctaattatgttttacttatgttatctctttgagactactcattatatttgtgcatccatat 5676918  T
Q  143 tattttgaatgtatgctcaccccttgttttgcgtgttggatgcctacaccttcgtggggtacaaatactcatgacgaagaacgttagaagttgtgagtct 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  5676919 tattttgaatgtatgctcaccccttgttttgcgtgttggatgcctacaccttcctggggtacaaatactcatgaggaagaacgttagaagttgtgagtct 5677018  T
Q  243 tggagaatgacgtggagtctttctcgtcaacttttatcgcatttgg 288  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  5677019 tggagaatgacgtggagtctttctcatcaacttttatcgcatttgg 5677064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 43 - 288
Target Start/End: Original strand, 5701871 - 5702116
Alignment:
Q  43 ttgaatgatgcgattattaagtgaagataatgtatatggctaattatgttttatttatgttatctctttgagtctactcattatatttgtgcatccatat 142  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  5701871 ttgaatgatgcgattattaaatgaagataatgtatatggctaattatgttttacttatgttatctctttgagactactcattatatttgtgcatccatat 5701970  T
Q  143 tattttgaatgtatgctcaccccttgttttgcgtgttggatgcctacaccttcgtggggtacaaatactcatgacgaagaacgttagaagttgtgagtct 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  5701971 tattttgaatgtatgctcaccccttgttttgcgtgttggatgcctacaccttcctggggtacaaatactcatgaggaagaacgttagaagttgtgagtct 5702070  T
Q  243 tggagaatgacgtggagtctttctcgtcaacttttatcgcatttgg 288  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  5702071 tggagaatgacgtggagtctttctcatcaacttttatcgcatttgg 5702116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 104 - 287
Target Start/End: Original strand, 11951403 - 11951586
Alignment:
Q  104 atctctttgagtctactcattatatttgtgcatccatattattttgaatgtatgctcaccccttgttttgcgtgttggatgcctacaccttcgtgggg-t 202  Q
    |||||||| ||||||||||| |||||| |||||   |||||||||||||||||| ||||| | ||||| ||||||||||||| || |||||||||||| |    
T  11951403 atctcttttagtctactcatgatatttatgcatttgtattattttgaatgtatggtcacctcctgttt-gcgtgttggatgcatataccttcgtgggggt 11951501  T
Q  203 acaaatactcatgacgaagaacgttagaagttgtgagtcttggagaatgacgtggagtctttctcgtcaacttttatcgcatttg 287  Q
    | | |||||||  ||||||||| |||||||||||||||||||||||| |  |||||| |||||||||||||||||||||||||||    
T  11951502 aaatatactcaaaacgaagaaccttagaagttgtgagtcttggagaacggtgtggagcctttctcgtcaacttttatcgcatttg 11951586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 5676767 - 5676808
Alignment:
Q  7 attattgaatgatgtgaatattaaatgagttgattattgaat 48  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5676767 attattgaatgatgtgaatattaaatgagttgattattgaat 5676808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 5701819 - 5701860
Alignment:
Q  7 attattgaatgatgtgaatattaaatgagttgattattgaat 48  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5701819 attattgaatgatgtgaatattaaatgagttgattattgaat 5701860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 180
Target Start/End: Complemental strand, 10152408 - 10152235
Alignment:
Q  7 attattgaatgatgtgaatattaaatgagttgattattgaatgatgcgattattaagtgaagataatgtatatggctaattatgttttatttatgttatc 106  Q
    ||||||||||||||||  |||| |||||  ||| |||||||||||  ||||||| | ||| |||||||| ||||| ||||| |||||||| |||| ||||    
T  10152408 attattgaatgatgtggttattgaatgatgtgaatattgaatgatatgattattgaatgatgataatgtgtatggttaattgtgttttatgtatgctatc 10152309  T
Q  107 tctttgagtctactcattatatttgtgcatccatattattttgaatgtatgctcaccccttgttttgcgtgttg 180  Q
    ||||||||||||||||| || ||| |||| || |||||||||||||||||||||||| | ||||||||| ||||    
T  10152308 tctttgagtctactcatgatgtttatgcacccgtattattttgaatgtatgctcaccacctgttttgcgggttg 10152235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 19264997 - 19264952
Alignment:
Q  236 tgagtcttggagaatgacgtggagtctttctcgtcaacttttatcg 281  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||||    
T  19264997 tgagtcttggaggatgacgtggagcctttctcgtcaatttttatcg 19264952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 20806164 - 20806235
Alignment:
Q  200 ggtacaaatactcatgacgaagaacgttagaagttgtgagtcttggagaatgacgtggagtctttctcgtcaa 272  Q
    |||||||||| ||| |||||||||| ||||| |||||||| |||| || |  ||| |||||||||||||||||    
T  20806164 ggtacaaatattcaagacgaagaactttagacgttgtgag-cttgaagtacaacgaggagtctttctcgtcaa 20806235  T

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Target: scaffold0065 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 191 - 291
Target Start/End: Original strand, 62449 - 62549
Alignment:
Q  191 ccttcgtggggtacaaatactcatgacgaagaacgttagaagttgtgagtcttggagaatgacgtggagtctttctcgtcaacttttatcgcatttggga 290  Q
    |||||||||| |||| | ||||||| | |||||| |||||||||||||||||||||||||||||||||  |||||| || |||||||||  |||||||||    
T  62449 ccttcgtgggctacataaactcatggcaaagaaccttagaagttgtgagtcttggagaatgacgtggaacctttcttgtaaacttttattacatttggga 62548  T
Q  291 g 291  Q
    |    
T  62549 g 62549  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 26278373 - 26278309
Alignment:
Q  103 tatctctttgagtctactcattatatttgtgcatccatattattttgaatgtatgctcacccctt 167  Q
    ||||||||||||||||||||| || ||| |||| |  |||||||||||||||||| |||||||||    
T  26278373 tatctctttgagtctactcatgatgtttatgcacctgtattattttgaatgtatgatcacccctt 26278309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 13236513 - 13236459
Alignment:
Q  103 tatctctttgagtctactcattatatttgtgcatccatattattttgaatgtatg 157  Q
    ||||||||||||| ||||||| |||||| |||| || ||||||||||||||||||    
T  13236513 tatctctttgagtttactcatgatatttatgcacccgtattattttgaatgtatg 13236459  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 279
Target Start/End: Original strand, 22451469 - 22451546
Alignment:
Q  202 tacaaatactcatgacgaagaacgttagaagttgtgagtcttggagaatgacgtggagtctttctcgtcaacttttat 279  Q
    |||| ||||||||||||| |||| ||||||||| ||||||| | || ||| || |||  |||||| ||||||||||||    
T  22451469 tacatatactcatgacgaggaaccttagaagttttgagtctcgaaggatggcgaggaacctttcttgtcaacttttat 22451546  T

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