View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5121-Insertion-8 (Length: 248)
Name: NF5121-Insertion-8
Description: NF5121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5121-Insertion-8 |
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| [»] scaffold0489 (1 HSPs) |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: scaffold0489 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: scaffold0489
Description:
Target: scaffold0489; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 11091 - 11342
Alignment:
| Q |
8 |
attacatgcctctctcgctcttacttccttctcttaaatgcagagacaactggaatgaattgccatgttatgtacgtaaggttaaatttttaaaacgtgg |
107 |
Q |
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| T |
11091 |
attacatgcctctctcgctcttacttccttctcttaaatgcagagacaactggaatgaattgccatgttatgtacgtaaggttatatttttaaaacgtgg |
11190 |
T |
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| Q |
108 |
nnnnnnnttcttaaggttaaaaacaaataa-accatgccctaagtggtcatattaatgtttcaagtgtgtaactctagtttaaaacctcat--------- |
197 |
Q |
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| T |
11191 |
aaaaaaattcttaaggtaaaaaacaaaaaagaccatgccctaagtagtcatattaatgtttcaagtgtgtaacgctagtttaaaacctcattttctttct |
11290 |
T |
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| Q |
198 |
-tttctttctttttatcacatcatcaacttagataatctatgatataacttc |
248 |
Q |
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| T |
11291 |
atttctttcttttaatcacatcatcaacttagataatctatgatataacttc |
11342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 9937 - 9686
Alignment:
| Q |
8 |
attacatgcctctctcgctcttacttccttctcttaaatgcagagacaactggaatgaattgccatgttatgtacgtaaggttaaatttttaaaacgtgg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9937 |
attacatgcctctctcgctcttacttccttctcttaaatgcagagacaactggaatgaattgccatgttatgtacgtaaggttatatttttaaaacgtgg |
9838 |
T |
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| Q |
108 |
nnnnnnnttcttaaggttaaaaacaaataa-accatgccctaagtggtcatattaatgtttcaagtgtgtaactctagtttaaaacctcat--------- |
197 |
Q |
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|||||||||| ||||||||| || |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9837 |
aaaaaaattcttaaggtaaaaaacaaaaaagaccatgccctaagtagtcatattaatgtttcaagtgtgtaacgctagtttaaaacctcattttctttct |
9738 |
T |
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| Q |
198 |
-tttctttctttttatcacatcatcaacttagataatctatgatataacttc |
248 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9737 |
atttctttcttttaatcacatcatcaacttagataatctatgatataacttc |
9686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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