View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5121-Insertion-9 (Length: 259)
Name: NF5121-Insertion-9
Description: NF5121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5121-Insertion-9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 51413890 - 51413646
Alignment:
| Q |
15 |
taacattaacattaacataacatatacatagtacagagattcaaagagagagcctcagaaacagatttgtcactggagtttgaatatgattcacctgcca |
114 |
Q |
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| T |
51413890 |
taacattaacattaacataacatatacatagtacagagattcaaagagagagcctcagaagcagatttgtcactggagtttgaatatgattcacctgcca |
51413791 |
T |
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| Q |
115 |
catccacatgattactagctgggtcaaatacacaggacacgtcagcattaatagtgatgttgatgttgatgttgatgatgatccaaccatttctgcaacc |
214 |
Q |
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| T |
51413790 |
catccacatgattactagctgggtcaaacacacaggacacgtcagcattaatagtgatgttgatgttgatgttgatgatgatccaaccatttctgcaacc |
51413691 |
T |
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| Q |
215 |
tcaattctctgtaaaacttttctatgaactcttccgccgcctggt |
259 |
Q |
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| T |
51413690 |
tcaattctctgtaaaacttttctatgaactcttccgccgcctggt |
51413646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 51418763 - 51418698
Alignment:
| Q |
189 |
atgatgatccaaccatttctgcaacctcaattctctgtaaaacttttctatgaactcttccgccgc |
254 |
Q |
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| T |
51418763 |
atgatgatccaaccatttctgcaacctcaactctctgtaaaacctctctatgaactcctctgccgc |
51418698 |
T |
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