View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5121_high_1 (Length: 486)
Name: NF5121_high_1
Description: NF5121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5121_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 49180693 - 49180320
Alignment:
| Q |
18 |
caaattgaaattaaattcaagacaacaagagaaacagcacagcgaacgcttacaatccagacaaaagtttctttccaaaaaacacagattgatccatgct |
117 |
Q |
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| T |
49180693 |
caaattgaaattaaattcaagacaacaagagaaacagcacagcgaacgcttacaatccagacaaaagtttctttcagaaaaacacagattgatccatgct |
49180594 |
T |
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| Q |
118 |
tgcacaggcgtatctcacaaaactcaccannnnnnnngcaaggattgggcatatcattttatctataataacatgtgaggaaccatgaatagtatgcata |
217 |
Q |
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| T |
49180593 |
tgcacaggcgtatctcacaaaactcaccattttttc-gcaaggattgggcatatcattttatctgtaataacatgtgaggaaccatgaatagtatgcata |
49180495 |
T |
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| Q |
218 |
gtgaacgaaaggaagatcaaacaaaacacagacacagtctcaaacctgacttccagccctgtagcagcaaactcatcttatacgtggcatatagccattt |
317 |
Q |
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| T |
49180494 |
gtgaacgaaaggaagatcaaacaaaacacagacacagtctcaaacctgacttccagccctgtagcagcaaactcatcttatacgtggcatatagccattt |
49180395 |
T |
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| Q |
318 |
ttgtaagtcactgcattaaacaaagaatttaacaggaatccttccccgcgttcaatagcaactagcagcattttc |
392 |
Q |
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| T |
49180394 |
ttgtaagtcactgcattgaacaaagaatttaacaggaatccttccccgcgttcaatagcaactagcagcattttc |
49180320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 387 - 480
Target Start/End: Complemental strand, 49180247 - 49180154
Alignment:
| Q |
387 |
attttcccacaaaagttaacaattatgtagttgtcaaccatgcaataggtgaaggacaaatttagtgattttcacctttaatgacctatgcttc |
480 |
Q |
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| T |
49180247 |
attttcccacaaaagttaacaattatgtagttgtcaaccatgcaataggtgaaggacaaatttagtgattttcacctttaatgacctaagcttc |
49180154 |
T |
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