View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5121_high_6 (Length: 371)
Name: NF5121_high_6
Description: NF5121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5121_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 334
Target Start/End: Complemental strand, 3831476 - 3831162
Alignment:
| Q |
20 |
aatacctcattgcaatatagaaatggcttctctaatttgtttggtttttctgtcatgtcacggttaagaaaactaagatgtttatgggttgagttaaaca |
119 |
Q |
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| T |
3831476 |
aatacctcagtgcaatatagaaatggcttctctaatttgtttggtttttctgtcatgtcacggttaacaaaactaagatgtttatgggttgagttaaacg |
3831377 |
T |
|
| Q |
120 |
gcgtttcccttaagatgacatgctaatttattcttaaactagttgcttaaccatttcatttactaacaccattttcaagggtatcaagaaaattttggca |
219 |
Q |
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| T |
3831376 |
gcgtttcccttaagatgacatgctaatttattcttaaactagttgcttaaccatttcatttactaacaccattttcaagggtatcaagaaaattttggca |
3831277 |
T |
|
| Q |
220 |
gaagatgaacaattaatgacatccgtatccgagttttatccttcttttggtaccaaggtaatcagacataaaagtttatgttgtttccctttactttgct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3831276 |
gaagatgaacaattaatgacatccgtatccgagttttatccttcttttggtaccaaggtaatcagacataaaagtttatgttgtttccctttactttgct |
3831177 |
T |
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| Q |
320 |
atccttttctagttc |
334 |
Q |
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||||||||| ||||| |
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| T |
3831176 |
atccttttccagttc |
3831162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 3837659 - 3837557
Alignment:
| Q |
97 |
atgtttatgggttgagttaaacagcgtttcccttaagatgacatgctaatttattcttaaactagttgcttaaccatttcatttactaacaccattttca |
196 |
Q |
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|||||||| ||||||||||||| | || |||||||| |||| || |||||||||||||||| |||| ||||||||||| ||||| ||||||| |||| | |
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| T |
3837659 |
atgtttatcggttgagttaaacggaattccccttaagttgacctgttaatttattcttaaaccagttacttaaccatttgatttattaacacctttttta |
3837560 |
T |
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| Q |
197 |
agg |
199 |
Q |
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||| |
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| T |
3837559 |
agg |
3837557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 326
Target Start/End: Complemental strand, 3837514 - 3837436
Alignment:
| Q |
248 |
ccgagttttatccttcttttggtaccaaggtaatcagacataaaagtttatgttgtttccctttactttgctatccttt |
326 |
Q |
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|||||| || |||||||| | ||| |||||||| |||||||||| |||||||| |||| |||| |||||||||||||| |
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| T |
3837514 |
ccgagtcttctccttcttccgttacaaaggtaataagacataaaaatttatgttctttctcttttctttgctatccttt |
3837436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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