View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5121_high_8 (Length: 339)
Name: NF5121_high_8
Description: NF5121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5121_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 41379296 - 41379613
Alignment:
| Q |
16 |
attataccaaagcaaaatatgtgttttggtttctctaggtatcacctaattcgttagaaactgcagtctgcagagacaaactctttcaaggatcttcagc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||| |
|
|
| T |
41379296 |
attataccaaagcaaaatatgtgttttggtttctctaggtatcacctaattcgttagaaactgtagtctgcagagaca--ctctttcgaggatcttcagc |
41379393 |
T |
|
| Q |
116 |
gcatataacggttatgtat----------------tcttacgcataagtcaataatcgaaccccacatcatatgcttaagtaatgtgagtcacttccccc |
199 |
Q |
| |
|
|||||||||| |||||| | || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41379394 |
gcatataacgattatgtctattaaatggtgaaatttcctacgcataagtcaatagtcgaaccccacatcatatgcttaagtaatgtgagtcacttccccc |
41379493 |
T |
|
| Q |
200 |
tcagaccacaccattttggcagtaaaatcatgtctaatgatatgccaaccattagcttagacacatcatatgcttttgttgttcaagaatccgatctcga |
299 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |||||||| |
|
|
| T |
41379494 |
tcagaccacatcattttggtagtaaaatcatgtctaatgatatgctaaccattagcttagacacttcatatgtttttgttgttcaagaatctgatctcga |
41379593 |
T |
|
| Q |
300 |
acacgccaaatccaacaaga |
319 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
41379594 |
acacgccaaatccaacaaga |
41379613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University