View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5121_low_10 (Length: 237)

Name: NF5121_low_10
Description: NF5121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5121_low_10
NF5121_low_10
[»] chr6 (2 HSPs)
chr6 (17-203)||(10606380-10606566)
chr6 (205-237)||(20687464-20687496)
[»] chr8 (1 HSPs)
chr8 (17-237)||(42638148-42638381)
[»] chr1 (4 HSPs)
chr1 (204-237)||(24976734-24976767)
chr1 (204-237)||(51976264-51976297)
chr1 (205-237)||(38618230-38618262)
chr1 (205-237)||(50355012-50355044)
[»] chr7 (1 HSPs)
chr7 (205-237)||(42344230-42344262)
[»] chr5 (1 HSPs)
chr5 (205-237)||(43589178-43589210)
[»] chr4 (2 HSPs)
chr4 (205-237)||(20681722-20681754)
chr4 (205-237)||(55511902-55511934)
[»] chr2 (3 HSPs)
chr2 (205-237)||(6851912-6851944)
chr2 (205-237)||(6852825-6852857)
chr2 (205-237)||(26487861-26487893)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 10606566 - 10606380
Alignment:
Q  17 ttattgtggaagaacagctgctgagtatgttttacagaaatgaaagaaactaagggtgctaacgtgaaaaaacagaagcatagaccagcttgggtgtaga 116  Q
    ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  10606566 ttattgtagaagaacagttgctgagtatgttttatagaaatgaaagaaactaagggtgctaacgtgaaaaaacagaagcatagaccggcttaggtgtaga 10606467  T
Q  117 agcaagtcattaaaataagataattaattttattannnnnnnaagcttgacctgttttaactgccatctgtctagtaaaatgagact 203  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||| |||||||||||||||||    
T  10606466 agcaagtcattaaaataagataattaattttattatttttttaagcttgacctgttttaattgccatctctctagtaaaatgagact 10606380  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 20687496 - 20687464
Alignment:
Q  205 aaagaattcctcctacctaccctaaatgccacc 237  Q
    |||| ||||||||||||||||||||||||||||    
T  20687496 aaagtattcctcctacctaccctaaatgccacc 20687464  T

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Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 42638381 - 42638148
Alignment:
Q  17 ttattgtggaagaaca-gctgctgagtatgttttacagaaatgaaagaaactaagggtgctaacgtgaaaaaacagaagcatagaccagcttgggtgtag 115  Q
    ||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42638381 ttattgtgggagaacatgctgctgagtatgttttacataaatgaaagaaactaagggtcctaacgtgaaaaaacagaagcatagaccagcttgggtgtag 42638282  T
Q  116 aagcaagtcattaaaataagataattaattttattannnnnnnaagcttgacctgttttaactgccatctgtctagtaaaatgagact------------ 203  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| ||||||| |||| ||||| ||||||                
T  42638281 aagcaagtcattaaaataagataattaattttattatttttttaagcttgacctgttttaacggccatctatctaataaaaggagactttctcatggtgg 42638182  T
Q  204 aaaagaattcctcctacctaccctaaatgccacc 237  Q
    |||||||||||||||||| |||||||||||||||    
T  42638181 aaaagaattcctcctacccaccctaaatgccacc 42638148  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 24976734 - 24976767
Alignment:
Q  204 aaaagaattcctcctacctaccctaaatgccacc 237  Q
    |||||||||||||||||| |||||||||||||||    
T  24976734 aaaagaattcctcctacccaccctaaatgccacc 24976767  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 51976297 - 51976264
Alignment:
Q  204 aaaagaattcctcctacctaccctaaatgccacc 237  Q
    |||||||||||||||||| |||||||||||||||    
T  51976297 aaaagaattcctcctacccaccctaaatgccacc 51976264  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 38618262 - 38618230
Alignment:
Q  205 aaagaattcctcctacctaccctaaatgccacc 237  Q
    ||||||||||||||||| |||||||||||||||    
T  38618262 aaagaattcctcctacccaccctaaatgccacc 38618230  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 50355012 - 50355044
Alignment:
Q  205 aaagaattcctcctacctaccctaaatgccacc 237  Q
    ||||||||||||||||| |||||||||||||||    
T  50355012 aaagaattcctcctacccaccctaaatgccacc 50355044  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 42344230 - 42344262
Alignment:
Q  205 aaagaattcctcctacctaccctaaatgccacc 237  Q
    ||||||||||||||||| |||||||||||||||    
T  42344230 aaagaattcctcctacccaccctaaatgccacc 42344262  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 43589178 - 43589210
Alignment:
Q  205 aaagaattcctcctacctaccctaaatgccacc 237  Q
    ||||||||||||||||| |||||||||||||||    
T  43589178 aaagaattcctcctacccaccctaaatgccacc 43589210  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 20681754 - 20681722
Alignment:
Q  205 aaagaattcctcctacctaccctaaatgccacc 237  Q
    ||||||||||||||||| |||||||||||||||    
T  20681754 aaagaattcctcctacccaccctaaatgccacc 20681722  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 55511934 - 55511902
Alignment:
Q  205 aaagaattcctcctacctaccctaaatgccacc 237  Q
    |||| ||||||||||||||||||||||||||||    
T  55511934 aaagtattcctcctacctaccctaaatgccacc 55511902  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 6851944 - 6851912
Alignment:
Q  205 aaagaattcctcctacctaccctaaatgccacc 237  Q
    ||||||||||||||||| |||||||||||||||    
T  6851944 aaagaattcctcctacccaccctaaatgccacc 6851912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 6852825 - 6852857
Alignment:
Q  205 aaagaattcctcctacctaccctaaatgccacc 237  Q
    ||||||||||||||||| |||||||||||||||    
T  6852825 aaagaattcctcctacccaccctaaatgccacc 6852857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 26487861 - 26487893
Alignment:
Q  205 aaagaattcctcctacctaccctaaatgccacc 237  Q
    ||||||||||||||||| |||||||||||||||    
T  26487861 aaagaattcctcctacccaccctaaatgccacc 26487893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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