View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5121_low_11 (Length: 232)
Name: NF5121_low_11
Description: NF5121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5121_low_11 |
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| [»] scaffold0689 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 9231745 - 9231966
Alignment:
| Q |
1 |
gattataaaacaaatacatcatctgggactttaattggagatactcatggttctgtccttctgaatcatccattgcagtaagaacatacttaagaaaatc |
100 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
9231745 |
gattataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatcaattccagtaagaacatacttaagaaaatc |
9231844 |
T |
|
| Q |
101 |
ataattacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9231845 |
ataattacaggaccttaccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaacgaacttctatgaaatggtttcagc |
9231944 |
T |
|
| Q |
201 |
ggattccgccaattctcttgat |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
9231945 |
ggattccgccaattctcttgat |
9231966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 18351021 - 18350800
Alignment:
| Q |
1 |
gattataaaacaaatacatcatctgggactttaattggagatactcatggttctgtccttctgaatcatccattgcagtaagaacatacttaagaaaatc |
100 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
18351021 |
gattataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatcaattccagtaagaacatacttaagaaaatc |
18350922 |
T |
|
| Q |
101 |
ataattacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18350921 |
ataattacaggaccttaccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaacgaacttctatgaaatggtttcagc |
18350822 |
T |
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| Q |
201 |
ggattccgccaattctcttgat |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
18350821 |
ggattccgccaattctcttgat |
18350800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 16902423 - 16902202
Alignment:
| Q |
1 |
gattataaaacaaatacatcatctgggactttaattggagatactcatggttctgtccttctgaatcatccattgcagtaagaacatacttaagaaaatc |
100 |
Q |
| |
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||||||||||||||||||||||||| || | ||||| ||||||||| |||||| |||||||||||||| || || |||||| ||||||| |||||| |
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| T |
16902423 |
gattataaaacaaatacatcatctgtgagtataatttgagatactcggggttctccccttctgaatcatcacttctaggaagaacctacttaaaaaaatc |
16902324 |
T |
|
| Q |
101 |
ataattacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcagg |
200 |
Q |
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||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
16902323 |
ataattacaggacctcaccgcttattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaggtggtttcagc |
16902224 |
T |
|
| Q |
201 |
ggattccgccaattctcttgat |
222 |
Q |
| |
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||||||||||||||||||||| |
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| T |
16902223 |
agattccgccaattctcttgat |
16902202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2914227 - 2914006
Alignment:
| Q |
1 |
gattataaaacaaatacatcatctgggactttaattggagatactcatggttctgtccttctgaatcatccattgcagtaagaacatacttaagaaaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| |||||||| ||| |||||| |||||||||||||||||| |
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| T |
2914227 |
gattataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttatgaatcattaattccagtaaaaacatacttaagaaaatc |
2914128 |
T |
|
| Q |
101 |
ataattacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2914127 |
ataattacaggaccttaccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcagg |
2914028 |
T |
|
| Q |
201 |
ggattccgccaattctcttgat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
2914027 |
ggattccgccaattctcttgat |
2914006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6488710 - 6488489
Alignment:
| Q |
1 |
gattataaaacaaatacatcatctgggactttaattggagatactcatggttctgtccttctgaatcatccattgcagtaagaacatacttaagaaaatc |
100 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||| ||||||||||||||||| | |||||||||||| ||| |||||||||||||||||||||||| |
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| T |
6488710 |
gattataaaacaaatacatcatatgtgactttaatttgagatactcatggttcttccattctgaatcatcaattctagtaagaacatacttaagaaaatc |
6488611 |
T |
|
| Q |
101 |
ataattacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcagg |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6488610 |
ataagtacaggaccttaccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcagg |
6488511 |
T |
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| Q |
201 |
ggattccgccaattctcttgat |
222 |
Q |
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|||||||||||||| ||||||| |
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| T |
6488510 |
ggattccgccaattttcttgat |
6488489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 17650019 - 17650239
Alignment:
| Q |
2 |
attataaaacaaatacatcatctgggactttaattggagatactcatggttctgtccttctgaatcatccattgcagtaagaacatacttaagaaaatca |
101 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
17650019 |
attataaaacaaatacatcatctgtgactttaatctgagatactcatggttcttcccttctgaatcatcaattccagtaagaacatacttaagaaaatca |
17650118 |
T |
|
| Q |
102 |
taattacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggg |
201 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17650119 |
tagttacatgaccttaccgcatattgattattaaagaatcgaagttgatgtgcttttagaaaagaggatatcaatgaacttctatgaaatggtttcaggg |
17650218 |
T |
|
| Q |
202 |
gattccgccaattctcttgat |
222 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
17650219 |
gattccgccaattctcttgat |
17650239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 20635558 - 20635723
Alignment:
| Q |
1 |
gattataaaacaaatacatcatctgggactttaattggagatactcatggttctgtccttctgaatcatccattgcagtaagaacatacttaagaaaatc |
100 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| ||| ||||||||||||| ||||||||||| |
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| T |
20635558 |
gattatgaaacaaatacatcatc----actttaatttgagatactcatggttcttcccttctgaatcatcaatttcagtaagaacatatttaagaaaatc |
20635653 |
T |
|
| Q |
101 |
ataattacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggat |
170 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
20635654 |
ataattacatgaccttaccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggat |
20635723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 1096 - 1001
Alignment:
| Q |
127 |
gattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat |
222 |
Q |
| |
|
||||||| |||||| ||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| |
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| T |
1096 |
gattattcaagaatcgaagtcgatttgctttataaaaagaagatatcaatgaacttctatgaaatggtttcacgggattcagccaattgtcttgat |
1001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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