View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5121_low_2 (Length: 473)

Name: NF5121_low_2
Description: NF5121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5121_low_2
NF5121_low_2
[»] chr2 (1 HSPs)
chr2 (16-456)||(12689707-12690144)
[»] chr5 (4 HSPs)
chr5 (261-445)||(20678556-20678740)
chr5 (118-241)||(26863445-26863569)
chr5 (56-117)||(20679805-20679866)
chr5 (56-123)||(23421574-23421640)
[»] chr8 (6 HSPs)
chr8 (321-456)||(14367702-14367837)
chr8 (292-353)||(18974753-18974814)
chr8 (386-456)||(18974819-18974889)
chr8 (59-115)||(2236-2290)
chr8 (56-115)||(14673570-14673628)
chr8 (57-113)||(25548139-25548193)
[»] chr6 (3 HSPs)
chr6 (321-456)||(19575718-19575853)
chr6 (60-113)||(4282658-4282711)
chr6 (57-113)||(22622465-22622519)
[»] chr3 (3 HSPs)
chr3 (292-357)||(19806867-19806932)
chr3 (386-456)||(19806796-19806866)
chr3 (56-113)||(20012350-20012405)
[»] chr1 (3 HSPs)
chr1 (118-241)||(19749769-19749893)
chr1 (56-117)||(20963514-20963576)
chr1 (56-115)||(15157945-15158002)
[»] chr7 (3 HSPs)
chr7 (292-353)||(5331060-5331121)
chr7 (386-456)||(5330985-5331055)
chr7 (56-115)||(550543-550601)
[»] scaffold0013 (1 HSPs)
scaffold0013 (59-115)||(135652-135706)
[»] chr4 (1 HSPs)
chr4 (59-115)||(722943-722998)


Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 16 - 456
Target Start/End: Original strand, 12689707 - 12690144
Alignment:
Q  16 atacaaaccctaattctaattcgattattgtacttttaacaagaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccct 115  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12689707 atacaaaccctaattctaatttgattattgtacttttaacaagaggtaaaactaaccttgaccgtgttttctgaatcacgaatcgtgatttggaaaccct 12689806  T
Q  116 aataaacctaatcaattataccgaggtgatcatgaagttgatgtcgcagccgcaaaccctatcacttgtgatgcggccgagaaacaatatcaacgtcatc 215  Q
    ||   |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  12689807 aa---acctaatcaattataccgaggtgatcatgacgttgatgtcgcagccgcaaaccccatcactggtgatgcggccgagaaacaatatcaacgtcatc 12689903  T
Q  216 tacggaggcatcgacaaccatgtgcaccattattcatacgttcaggtcctcaggaaggtctacacacgaaaatccatatcatcgccgctgctagaaagaa 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12689904 tacggaggcatcgacaaccatgtgcaccattattcatacgttcaggtcctcatgaaggtctacacacgaaaatccatatcatcgccgctgctagaaagaa 12690003  T
Q  316 agccacaagcaatcatactcaaagaccagataagtttttgctcatattttgtcggtttcaaaggaaggcatcattatcatgattgtagttcatcgatgtt 415  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12690004 agccgcaagcaatcagactcaaagaccagataagtttttgctcatattttgtcggtttcaaaggaaggcatcattatcatgattgtcgttcatcgatgtt 12690103  T
Q  416 tgaaaagcttcaaaataagtgtgttcacatgtttgagacat 456  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  12690104 tgaaaagctttaaaataagtgtgttcacatgttggagacat 12690144  T

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Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 261 - 445
Target Start/End: Complemental strand, 20678740 - 20678556
Alignment:
Q  261 gtcctcaggaaggtctacacacgaaaatccatatcatcgccgctgctagaaagaaagccacaagcaatcatactcaaagaccagataagtttttgctcat 360  Q
    ||||||| |||||| ||||| |||||||||||||||||| || |||||||||||||||| |||| ||||| |||||||||||| ||||||||| ||||||    
T  20678740 gtcctcacgaaggtgtacacgcgaaaatccatatcatcgtcgttgctagaaagaaagccgcaaggaatcagactcaaagaccatataagttttcgctcat 20678641  T
Q  361 attttgtcggtttcaaaggaaggcatcattatcatgattgtagttcatcgatgtttgaaaagcttcaaaataagtgtgttcacat 445  Q
    ||||||| ||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||    
T  20678640 attttgtaggtttcaaaggaaggcatcattatcatgattctcgttcattgatgtttgaaaagcttcaaaataagtgtgttcacat 20678556  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 26863569 - 26863445
Alignment:
Q  118 taaacctaatcaattataccgaggtgatcatgaagttga-tgtcgcagccgcaaaccctatcacttgtgatgcggccgagaaacaatatcaacgtcatct 216  Q
    ||||||||||||||||| |||||| |||||||  ||||| ||||||||| |||||||| |||  |  |||||| ||| |||| |||||  ||||||||||    
T  26863569 taaacctaatcaattatgccgaggggatcatggcgttgaatgtcgcagctgcaaaccccatcgttgatgatgccgccaagaagcaatacgaacgtcatct 26863470  T
Q  217 acggaggcatcgacaaccatgtgca 241  Q
    | |||||||||||||||||||||||    
T  26863469 atggaggcatcgacaaccatgtgca 26863445  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 20679866 - 20679805
Alignment:
Q  56 aagaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccctaa 117  Q
    ||||||||||||||||||||||| | ||||||||||| | |||||||| |||||||||||||    
T  20679866 aagaggtaaaactaaccttgaccacattttctgaatctcaaatcgtgacttggaaaccctaa 20679805  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 23421574 - 23421640
Alignment:
Q  56 aagaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccctaataaacc 123  Q
    |||||||||||| |||||||||| ||||| ||||||| | |||| ||||||||||||||||| |||||    
T  23421574 aagaggtaaaacaaaccttgaccacgttt-ctgaatcgcaaatcatgatttggaaaccctaagaaacc 23421640  T

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Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 321 - 456
Target Start/End: Original strand, 14367702 - 14367837
Alignment:
Q  321 caagcaatcatactcaaagaccagataagtttttgctcatattttgtcggtttcaaaggaaggcatcattatcatgattgtagttcatcgatgtttgaaa 420  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| |||  ||    
T  14367702 caagcaatcagactcaaagaccagataagttttcgctcatattttgtcggtttcaaaggatggcatcattatcatgattgtcgttcattgatattttgaa 14367801  T
Q  421 agcttcaaaataagtgtgttcacatgtttgagacat 456  Q
    ||||||||||||| ||||||||||| || |||||||    
T  14367802 agcttcaaaataaatgtgttcacattttggagacat 14367837  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 18974753 - 18974814
Alignment:
Q  292 tatcatcgccgctgctagaaagaaagccacaagcaatcatactcaaagaccagataagtttt 353  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  18974753 tatcatcgccgctgctagaaagaaagccgcaagcaatcaaactcaaagaccagataagtttt 18974814  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 456
Target Start/End: Original strand, 18974819 - 18974889
Alignment:
Q  386 tcattatcatgattgtagttcatcgatgtttgaaaagcttcaaaataagtgtgttcacatgtttgagacat 456  Q
    |||||||||||||||| |||||| |||||||| ||||||||||||||| || |||||||| || |||||||    
T  18974819 tcattatcatgattgtcgttcattgatgtttggaaagcttcaaaataaatgcgttcacattttggagacat 18974889  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 2290 - 2236
Alignment:
Q  59 aggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccct 115  Q
    ||||||||||||||| |||| ||||| ||||||||  ||||||||||||||||||||    
T  2290 aggtaaaactaacctcgaccacgttt-ctgaatcaa-aatcgtgatttggaaaccct 2236  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 14673570 - 14673628
Alignment:
Q  56 aagaggtaaaactaaccttgaccgcgttttctgaatcacgaatc-gtgatttggaaaccct 115  Q
    |||||||||||||||||| |||| || ||||||||||| ||||| ||||||||||||||||    
T  14673570 aagaggtaaaactaacctcgaccacg-tttctgaatca-gaatctgtgatttggaaaccct 14673628  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 25548139 - 25548193
Alignment:
Q  57 agaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaacc 113  Q
    ||||||||||||||||| |||| || |||||||||||  ||||||||||||||||||    
T  25548139 agaggtaaaactaacctcgaccacg-tttctgaatca-aaatcgtgatttggaaacc 25548193  T

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Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 321 - 456
Target Start/End: Complemental strand, 19575853 - 19575718
Alignment:
Q  321 caagcaatcatactcaaagaccagataagtttttgctcatattttgtcggtttcaaaggaaggcatcattatcatgattgtagttcatcgatgtttgaaa 420  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||  | ||||||||||||||||||||||||||||||| |||||| ||| |||  ||    
T  19575853 caagcaatcagactcaaagaccagataagttttcgctcatattttgaagctttcaaaggaaggcatcattatcatgattgtcgttcattgatattttgaa 19575754  T
Q  421 agcttcaaaataagtgtgttcacatgtttgagacat 456  Q
    ||||||||||||| ||||||||||| || |||||||    
T  19575753 agcttcaaaataaatgtgttcacattttggagacat 19575718  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 4282711 - 4282658
Alignment:
Q  60 ggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaacc 113  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  4282711 ggtaaaactaaccttgaccacgttttctggatcacaaatcgtgatttggaaacc 4282658  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 22622519 - 22622465
Alignment:
Q  57 agaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaacc 113  Q
    ||||||||||||||||| |||| || |||||||||||  ||||||||||||||||||    
T  22622519 agaggtaaaactaacctcgaccacg-tttctgaatca-aaatcgtgatttggaaacc 22622465  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 19806932 - 19806867
Alignment:
Q  292 tatcatcgccgctgctagaaagaaagccacaagcaatcatactcaaagaccagataagtttttgct 357  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  19806932 tatcatcgccgctgctagaaagaaagccgcaagcaatcaaactcaaagaccagataagtttttgct 19806867  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 456
Target Start/End: Complemental strand, 19806866 - 19806796
Alignment:
Q  386 tcattatcatgattgtagttcatcgatgtttgaaaagcttcaaaataagtgtgttcacatgtttgagacat 456  Q
    |||||||||||||||| |||||| |||||||| ||||||||||||||| || |||||||| || |||||||    
T  19806866 tcattatcatgattgtcgttcattgatgtttggaaagcttcaaaataaatgcgttcacattttggagacat 19806796  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 20012405 - 20012350
Alignment:
Q  56 aagaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaacc 113  Q
    |||||||||||||||||| |||| || |||||||||||  ||||||||||||||||||    
T  20012405 aagaggtaaaactaacctcgaccacg-tttctgaatca-aaatcgtgatttggaaacc 20012350  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 19749769 - 19749893
Alignment:
Q  118 taaacctaatcaattataccgaggtgatcatgaagttga-tgtcgcagccgcaaaccctatcacttgtgatgcggccgagaaacaatatcaacgtcatct 216  Q
    ||||||||||||||||| |||||| |||||||  ||||| |||||||||||||||||| |||  |  |||||| ||| |||| |||||  ||||||||||    
T  19749769 taaacctaatcaattatgccgaggggatcatggcgttgaatgtcgcagccgcaaaccccatcgttgatgatgccgccaagaagcaatacgaacgtcatct 19749868  T
Q  217 acggaggcatcgacaaccatgtgca 241  Q
     ||||||||||||||||||||||||    
T  19749869 gcggaggcatcgacaaccatgtgca 19749893  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 20963576 - 20963514
Alignment:
Q  56 aagaggtaaaactaaccttgaccgcgttttctgaatcac-gaatcgtgatttggaaaccctaa 117  Q
    ||||||||||| ||||||||||| ||||||||||||| |  |||| |||||||||||||||||    
T  20963576 aagaggtaaaattaaccttgaccacgttttctgaatcgcaaaatcttgatttggaaaccctaa 20963514  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 15158002 - 15157945
Alignment:
Q  56 aagaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccct 115  Q
    |||||||||||||||||| |||| || |||||||||||  ||||||||||||||||||||    
T  15158002 aagaggtaaaactaacctcgaccacg-tttctgaatca-aaatcgtgatttggaaaccct 15157945  T

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Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 5331121 - 5331060
Alignment:
Q  292 tatcatcgccgctgctagaaagaaagccacaagcaatcatactcaaagaccagataagtttt 353  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  5331121 tatcatcgccgctgctagaaagaaagccgcaagcaatcaaactcaaagaccagataagtttt 5331060  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 456
Target Start/End: Complemental strand, 5331055 - 5330985
Alignment:
Q  386 tcattatcatgattgtagttcatcgatgtttgaaaagcttcaaaataagtgtgttcacatgtttgagacat 456  Q
    |||||||||||||||| |||||| |||||||| ||||||||||||||| || |||||||| || |||||||    
T  5331055 tcattatcatgattgtcgttcattgatgtttggaaagcttcaaaataaatgcgttcacattttggagacat 5330985  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 550601 - 550543
Alignment:
Q  56 aagaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccct 115  Q
    |||| |||||||||||||||||| || |||||||||| | |||||||||| |||||||||    
T  550601 aagacgtaaaactaaccttgaccacg-tttctgaatcgcaaatcgtgattcggaaaccct 550543  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 135706 - 135652
Alignment:
Q  59 aggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccct 115  Q
    ||||||||||||||| |||| ||||| ||||||||  ||||||||||||||||||||    
T  135706 aggtaaaactaacctcgaccacgttt-ctgaatcaa-aatcgtgatttggaaaccct 135652  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 722943 - 722998
Alignment:
Q  59 aggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccct 115  Q
    |||||||||||||||||||| || |||| ||||||| |||||||||| | |||||||    
T  722943 aggtaaaactaaccttgaccacg-tttccgaatcacaaatcgtgattcgtaaaccct 722998  T

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