View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5121_low_3 (Length: 435)
Name: NF5121_low_3
Description: NF5121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5121_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 416
Target Start/End: Original strand, 25508350 - 25508744
Alignment:
| Q |
19 |
agacagaatttaggaggacaattctaccaccaatgaataagtgtctattattccattatttggacaatcgattcatcactacatcgataactggtttcca |
118 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||||||||||||||||||||| |||||||||| |
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| T |
25508350 |
agacataatttaggaggacaattctaccaccaattaataagtgtctattattccatt---tagacaaccgattcatcactacatcgatagctggtttcca |
25508446 |
T |
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| Q |
119 |
caacccatctcaacgatgataacctctaatggaaaagcccaaatatttaaagggtagagcatcaactttacaatataaaactccagcctcttcctccatc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25508447 |
caacccatctcaacgatgataacctctaatggaaaagcccaaatacttaaagggtagagcatcaactttacaatataaaactccagcctcttccttcatc |
25508546 |
T |
|
| Q |
219 |
caagaattgttgaatgttaactccaactaaaaggcttttgtgaaagttaaccttcaaaccagacatcaattcnnnnnnntgcaaaattgaatcggcgccg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
25508547 |
caagaattgttgaatgttaactccaactaaaaggcttttgtgaaagttaaccttcaaaccagacaccaattcaaaaaaatgcaaaattgaatcggcgccg |
25508646 |
T |
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| Q |
319 |
atacatttttccaactcttcttactcgtaattagagtgtcgtctgcatattgaagatacgacactttgattccttcatatccaaactgagacccctca |
416 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
25508647 |
atacatttttccaactcttcttacccgtaattaaagtgtcgtctgcatattgaagatacgacactttgattccttcatatccaaactaatacccctca |
25508744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 10497652 - 10497768
Alignment:
| Q |
19 |
agacagaatttaggaggacaattctaccaccaatgaataagtgtctattattccattatttggacaatcgattcatcactacatcgataactggtttcca |
118 |
Q |
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|||||||||| | |||||||||| |||||||||| ||||| |||||||||||| ||||||||| |||||| ||||| |||| | ||| |||||||| |
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| T |
10497652 |
agacagaattcaagaggacaattataccaccaatagataagcgtctattattcc---atttggacagacgattcctcactgcatccacaaccggtttcca |
10497748 |
T |
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| Q |
119 |
caacccatctcaacgatgat |
138 |
Q |
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||| || ||| |||||||| |
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| T |
10497749 |
caatccccctctacgatgat |
10497768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 10502681 - 10502797
Alignment:
| Q |
19 |
agacagaatttaggaggacaattctaccaccaatgaataagtgtctattattccattatttggacaatcgattcatcactacatcgataactggtttcca |
118 |
Q |
| |
|
|||||||||| | |||||||||| |||||||||| ||||| |||||||||||| ||||||||| |||||| ||||| |||| | ||| |||||||| |
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| T |
10502681 |
agacagaattcaagaggacaattataccaccaatagataagcgtctattattcc---atttggacagacgattcctcactgcatccacaaccggtttcca |
10502777 |
T |
|
| Q |
119 |
caacccatctcaacgatgat |
138 |
Q |
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||| || ||| |||||||| |
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| T |
10502778 |
caatccccctctacgatgat |
10502797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 13335956 - 13336066
Alignment:
| Q |
21 |
acagaatttaggaggacaattctaccaccaatgaataagtgtctattattccattatttggacaatcgattcatcactacatcgataactggtttccaca |
120 |
Q |
| |
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|||||||| | |||||||||| |||||||||| ||||| |||||||||||| ||||||||| |||||| ||||| |||| | ||| |||||||||| |
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| T |
13335956 |
acagaattcaagaggacaattataccaccaatagataagcgtctattattcc---atttggacagacgattcctcactgcatccacaaccggtttccaca |
13336052 |
T |
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| Q |
121 |
acccatctcaacga |
134 |
Q |
| |
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| || |||| |||| |
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| T |
13336053 |
atccctctctacga |
13336066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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