View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5121_low_4 (Length: 389)
Name: NF5121_low_4
Description: NF5121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5121_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 370
Target Start/End: Complemental strand, 3543956 - 3543606
Alignment:
| Q |
20 |
tcactacaaccggcgtaggtctcggctacggcatcacaatcgccgtaagcatccttgtcctcatctccaccatcatgctcgtttcctacctctgcgtccg |
119 |
Q |
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| T |
3543956 |
tcactacaaccggcgtaggtctcggctacggcatcacaatcgccgtaagcatccttgtcctcatctccaccatcatgctcgtttcctacctttgcgtccg |
3543857 |
T |
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| Q |
120 |
tataaaatcacaaggacgcagagactccttccatctcgacatccaccatcaacctcatactactatcaactcgggctcggctcagcccggtccatttatc |
219 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3543856 |
tataaaatcacacggacgcagagactccttccatctcgacatccaccatcaacctcatactactatcaactcgggcttggctcagcccggtccatttatc |
3543757 |
T |
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| Q |
220 |
atgggcctagaaaagcccatgattgaatcatatccaaagatgatacttggagagagtagaagattgcccaaacccaatgatggccagtgtgctatttgtt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3543756 |
atgggcctagaaaagcccatgattgaatcatatccaaagatgatacttggagagagtagaagattgcccaaacccaatggtggccagtgtgctatttgtt |
3543657 |
T |
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| Q |
320 |
tgactgattatctaccaaaggaaacaatacgctgtgttccagattgtcaac |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3543656 |
tgactgattatctaccaaaggaaacaatacgctgtgttccagattgtcaac |
3543606 |
T |
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