View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5121_low_5 (Length: 374)

Name: NF5121_low_5
Description: NF5121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5121_low_5
NF5121_low_5
[»] chr7 (4 HSPs)
chr7 (1-356)||(18349902-18350257)
chr7 (107-138)||(42481846-42481877)
chr7 (95-157)||(15311212-15311274)
chr7 (106-136)||(26975314-26975344)
[»] chr3 (9 HSPs)
chr3 (83-138)||(1441363-1441418)
chr3 (105-138)||(24916580-24916613)
chr3 (109-138)||(48089646-48089675)
chr3 (106-138)||(7012681-7012713)
chr3 (106-138)||(10852741-10852773)
chr3 (106-138)||(23918883-23918915)
chr3 (106-150)||(26519705-26519749)
chr3 (106-138)||(38626753-38626785)
chr3 (106-138)||(42644303-42644335)
[»] chr1 (9 HSPs)
chr1 (84-138)||(35961443-35961497)
chr1 (111-159)||(3819719-3819767)
chr1 (106-138)||(29759716-29759748)
chr1 (106-161)||(4347039-4347094)
chr1 (106-140)||(32365144-32365178)
chr1 (84-138)||(34915141-34915195)
chr1 (84-138)||(44786874-44786928)
chr1 (106-138)||(7335908-7335940)
chr1 (106-138)||(50751257-50751289)
[»] chr6 (2 HSPs)
chr6 (106-138)||(25208723-25208755)
chr6 (84-138)||(882761-882815)
[»] chr5 (6 HSPs)
chr5 (106-138)||(24036628-24036660)
chr5 (95-133)||(4306598-4306636)
chr5 (105-161)||(6988216-6988272)
chr5 (105-161)||(15954972-15955028)
chr5 (106-138)||(22811081-22811113)
chr5 (106-150)||(35760244-35760288)
[»] chr8 (6 HSPs)
chr8 (83-138)||(16972020-16972075)
chr8 (105-155)||(10552920-10552970)
chr8 (88-161)||(7601884-7601957)
chr8 (95-160)||(10368051-10368116)
chr8 (97-138)||(36447704-36447745)
chr8 (106-138)||(19649235-19649267)
[»] chr4 (6 HSPs)
chr4 (97-140)||(54487246-54487289)
chr4 (84-138)||(25927381-25927435)
chr4 (105-138)||(46382868-46382901)
chr4 (106-150)||(29149323-29149367)
chr4 (98-146)||(33560518-33560566)
chr4 (106-138)||(36150630-36150662)
[»] chr2 (8 HSPs)
chr2 (95-138)||(3853939-3853982)
chr2 (95-138)||(15220817-15220860)
chr2 (95-161)||(1763259-1763325)
chr2 (84-137)||(44412151-44412204)
chr2 (106-150)||(2213556-2213600)
chr2 (106-138)||(10918653-10918685)
chr2 (106-138)||(23359956-23359988)
chr2 (106-150)||(28127301-28127345)


Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 18350257 - 18349902
Alignment:
Q  1 attctcaagtttattagaagtagcaaatgcatgcatatacacactcaaaaggaattttgttccaaacatgaatagattaaacatcactttttcgtgaatg 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18350257 attctcaagtttattacaagtagcaaatgcatgcatatacacactcaaaaggaattttgatccaaacatgaatagattaaacatcactttttcgtgaatg 18350158  T
Q  101 tatgtaaacataaatcattttacattcaactcacttttgagcaaattcaactttacaaaataattgacccagttatgcattttgtaagttatatgttaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18350157 tatgtaaacataaatcattttacattcaactcacttttgagcaaattcaactttacaaaataattgacccagttatgcattttgtaagttatatgttaac 18350058  T
Q  201 aaacataaggcaaagaaacgaattgcataagtgtcctcaagagtgtatccaagtagtatcgattgagacgttgaagaaatattgcaaaggacgtttaggt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18350057 aaacataaggcaaagaaacgaattgcataagtgtcctcaagagtgtagccaagtagtatcgattgagacgttgaagaaatattgcaaaggacgtttaggt 18349958  T
Q  301 gtgtttggttctgtcgnnnnnnnttaattttgaatgaattgatttcagttaaaagt 356  Q
    ||||||||||||||||       |||||||||||||||||||||||| ||||||||    
T  18349957 gtgtttggttctgtcggaaaaaattaattttgaatgaattgatttcatttaaaagt 18349902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 138
Target Start/End: Complemental strand, 42481877 - 42481846
Alignment:
Q  107 aacataaatcattttacattcaactcactttt 138  Q
    ||||||||||||||||||||||||||||||||    
T  42481877 aacataaatcattttacattcaactcactttt 42481846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 15311274 - 15311212
Alignment:
Q  95 tgaatgtatgtaaacataaatcattttacattcaactcacttttgagcaaattcaactttaca 157  Q
    |||||||||  |||||||||||| | |||||||||||||||||| | || |||||| ||||||    
T  15311274 tgaatgtatccaaacataaatcactatacattcaactcacttttaaccatattcaattttaca 15311212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 136
Target Start/End: Complemental strand, 26975344 - 26975314
Alignment:
Q  106 aaacataaatcattttacattcaactcactt 136  Q
    |||||||||||||||||||||||||||||||    
T  26975344 aaacataaatcattttacattcaactcactt 26975314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 1441418 - 1441363
Alignment:
Q  83 atcactttttcgtgaatgtatgtaaacataaatcattttacattcaactcactttt 138  Q
    ||||||||| ||||||||||| |||||| |||||| ||||| ||||||||||||||    
T  1441418 atcacttttacgtgaatgtatctaaacacaaatcactttacgttcaactcactttt 1441363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 24916580 - 24916613
Alignment:
Q  105 taaacataaatcattttacattcaactcactttt 138  Q
    ||||||||||||||||||||||||||||||||||    
T  24916580 taaacataaatcattttacattcaactcactttt 24916613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 138
Target Start/End: Complemental strand, 48089675 - 48089646
Alignment:
Q  109 cataaatcattttacattcaactcactttt 138  Q
    ||||||||||||||||||||||||||||||    
T  48089675 cataaatcattttacattcaactcactttt 48089646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 7012681 - 7012713
Alignment:
Q  106 aaacataaatcattttacattcaactcactttt 138  Q
    |||||||||||| ||||||||||||||||||||    
T  7012681 aaacataaatcactttacattcaactcactttt 7012713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 10852773 - 10852741
Alignment:
Q  106 aaacataaatcattttacattcaactcactttt 138  Q
    |||||||||||| ||||||||||||||||||||    
T  10852773 aaacataaatcactttacattcaactcactttt 10852741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 23918883 - 23918915
Alignment:
Q  106 aaacataaatcattttacattcaactcactttt 138  Q
    |||||||||||| ||||||||||||||||||||    
T  23918883 aaacataaatcactttacattcaactcactttt 23918915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 26519705 - 26519749
Alignment:
Q  106 aaacataaatcattttacattcaactcacttttgagcaaattcaa 150  Q
    |||||||||||| || ||||||||||||||||| |||||| ||||    
T  26519705 aaacataaatcaattcacattcaactcactttttagcaaaatcaa 26519749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 38626753 - 38626785
Alignment:
Q  106 aaacataaatcattttacattcaactcactttt 138  Q
    ||||||||||||||| |||||||||||||||||    
T  38626753 aaacataaatcatttcacattcaactcactttt 38626785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 42644303 - 42644335
Alignment:
Q  106 aaacataaatcattttacattcaactcactttt 138  Q
    |||||||||||| ||||||||||||||||||||    
T  42644303 aaacataaatcactttacattcaactcactttt 42644335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 35961443 - 35961497
Alignment:
Q  84 tcactttttcgtgaatgtatgtaaacataaatcattttacattcaactcactttt 138  Q
    |||||||| | |||||||||  |||||||||||||||||| ||||||||||||||    
T  35961443 tcacttttacatgaatgtatagaaacataaatcattttaccttcaactcactttt 35961497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 3819719 - 3819767
Alignment:
Q  111 taaatcattttacattcaactcacttttgagcaaattcaactttacaaa 159  Q
    ||||||||||||||||||||||||||||   ||||||||| ||||||||    
T  3819719 taaatcattttacattcaactcacttttagccaaattcaattttacaaa 3819767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 29759716 - 29759748
Alignment:
Q  106 aaacataaatcattttacattcaactcactttt 138  Q
    |||||||||||||||||||||||||||||||||    
T  29759716 aaacataaatcattttacattcaactcactttt 29759748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 4347039 - 4347094
Alignment:
Q  106 aaacataaatcattttacattcaactcacttttgagcaaattcaactttacaaaat 161  Q
    |||||||||||| |||||||||||||||||||| | |||| |||| | ||||||||    
T  4347039 aaacataaatcactttacattcaactcacttttaaccaaaatcaattctacaaaat 4347094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 32365144 - 32365178
Alignment:
Q  106 aaacataaatcattttacattcaactcacttttga 140  Q
    |||||||||||| ||||||||||||||||||||||    
T  32365144 aaacataaatcaatttacattcaactcacttttga 32365178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 34915141 - 34915195
Alignment:
Q  84 tcactttttcgtgaatgtatgtaaacataaatcattttacattcaactcactttt 138  Q
    |||||||| | |||||||||  |||||||||||||||||| | ||||||||||||    
T  34915141 tcacttttacatgaatgtattcaaacataaatcattttacctgcaactcactttt 34915195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 44786928 - 44786874
Alignment:
Q  84 tcactttttcgtgaatgtatgtaaacataaatcattttacattcaactcactttt 138  Q
    |||||||| | |||||||||   ||||||||||||||||||||||||||| ||||    
T  44786928 tcacttttacatgaatgtattcgaacataaatcattttacattcaactcattttt 44786874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 7335940 - 7335908
Alignment:
Q  106 aaacataaatcattttacattcaactcactttt 138  Q
    |||||||||||| ||||||||||||||||||||    
T  7335940 aaacataaatcactttacattcaactcactttt 7335908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 50751289 - 50751257
Alignment:
Q  106 aaacataaatcattttacattcaactcactttt 138  Q
    ||||||||||||||||||||| |||||||||||    
T  50751289 aaacataaatcattttacatttaactcactttt 50751257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 25208723 - 25208755
Alignment:
Q  106 aaacataaatcattttacattcaactcactttt 138  Q
    |||||||||||||||||||||||||||||||||    
T  25208723 aaacataaatcattttacattcaactcactttt 25208755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 882761 - 882815
Alignment:
Q  84 tcactttttcgtgaatgtatgtaaacataaatcattttacattcaactcactttt 138  Q
    |||||||| | |||||||||  |||||||||||||||||| ||||||||| ||||    
T  882761 tcacttttgcatgaatgtatccaaacataaatcattttaccttcaactcaatttt 882815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 24036628 - 24036660
Alignment:
Q  106 aaacataaatcattttacattcaactcactttt 138  Q
    |||||||||||||||||||||||||||||||||    
T  24036628 aaacataaatcattttacattcaactcactttt 24036660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 133
Target Start/End: Original strand, 4306598 - 4306636
Alignment:
Q  95 tgaatgtatgtaaacataaatcattttacattcaactca 133  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  4306598 tgaatgtatccaaacataaatcattttacattcaactca 4306636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 6988216 - 6988272
Alignment:
Q  105 taaacataaatcattttacattcaactcacttttgagcaaattcaactttacaaaat 161  Q
    |||||||||||||||||| |||||||| |||||| |  ||| |||| ||||||||||    
T  6988216 taaacataaatcattttaaattcaacttacttttaattaaaatcaattttacaaaat 6988272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 15955028 - 15954972
Alignment:
Q  105 taaacataaatcattttacattcaactcacttttgagcaaattcaactttacaaaat 161  Q
    |||||||||||| |||||||||||| |||||||| | |  |||||| ||||||||||    
T  15955028 taaacataaatccttttacattcaaatcacttttaatccgattcaattttacaaaat 15954972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 22811081 - 22811113
Alignment:
Q  106 aaacataaatcattttacattcaactcactttt 138  Q
    |||||||||||| ||||||||||||||||||||    
T  22811081 aaacataaatcactttacattcaactcactttt 22811113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 35760244 - 35760288
Alignment:
Q  106 aaacataaatcattttacattcaactcacttttgagcaaattcaa 150  Q
    |||||||||||| || ||||||||||||||||| |||||| ||||    
T  35760244 aaacataaatcaattcacattcaactcactttttagcaaaatcaa 35760288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 16972075 - 16972020
Alignment:
Q  83 atcactttttcgtgaatgtatgtaaacataaatcattttacattcaactcactttt 138  Q
    ||||||||| | |||||||||  ||||| |||||||||||| ||||||||||||||    
T  16972075 atcacttttacatgaatgtattcaaacacaaatcattttaccttcaactcactttt 16972020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 10552970 - 10552920
Alignment:
Q  105 taaacataaatcattttacattcaactcacttttgagcaaattcaacttta 155  Q
    ||||||||||||| |||||||||||||||||||| | |||| |||| ||||    
T  10552970 taaacataaatcaatttacattcaactcacttttaaccaaaatcaatttta 10552920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 7601957 - 7601884
Alignment:
Q  88 tttttcgtgaatgtatgtaaacataaatcattttacattcaactcacttttgagcaaattcaactttacaaaat 161  Q
    |||||| ||||| |||| ||  |||||||||||||||||||| ||||||||   |||| |||| ||||||||||    
T  7601957 tttttcatgaatatatgcaactataaatcattttacattcaattcacttttagtcaaaatcaattttacaaaat 7601884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 10368051 - 10368116
Alignment:
Q  95 tgaatgtatgtaaacataaatcattttacattcaactcacttttgagcaaattcaactttacaaaa 160  Q
    ||||||||| |||||| |||||| ||||| ||||||||||||||   |||| |||| |||||||||    
T  10368051 tgaatgtatctaaacacaaatcactttaccttcaactcacttttactcaaaatcaattttacaaaa 10368116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 36447745 - 36447704
Alignment:
Q  97 aatgtatgtaaacataaatcattttacattcaactcactttt 138  Q
    ||||||| |||||| ||||||||||| |||||||||||||||    
T  36447745 aatgtatctaaacacaaatcattttatattcaactcactttt 36447704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 19649235 - 19649267
Alignment:
Q  106 aaacataaatcattttacattcaactcactttt 138  Q
    |||||||||||| ||||||||||||||||||||    
T  19649235 aaacataaatcactttacattcaactcactttt 19649267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 54487289 - 54487246
Alignment:
Q  97 aatgtatgtaaacataaatcattttacattcaactcacttttga 140  Q
    |||||||  |||||||||||| ||||||||||||||||||||||    
T  54487289 aatgtatccaaacataaatcaatttacattcaactcacttttga 54487246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 25927381 - 25927435
Alignment:
Q  84 tcactttttcgtgaatgtatgtaaacataaatcattttacattcaactcactttt 138  Q
    |||||||| |||||||||||  ||| ||||| |||||||| ||||||||||||||    
T  25927381 tcacttttacgtgaatgtatcgaaatataaaacattttactttcaactcactttt 25927435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 46382868 - 46382901
Alignment:
Q  105 taaacataaatcattttacattcaactcactttt 138  Q
    ||||||||||||||||||||||||||| ||||||    
T  46382868 taaacataaatcattttacattcaacttactttt 46382901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 29149367 - 29149323
Alignment:
Q  106 aaacataaatcattttacattcaactcacttttgagcaaattcaa 150  Q
    |||||||||||| || ||||||||||||||||| |||||| ||||    
T  29149367 aaacataaatcaattcacattcaactcactttttagcaaaatcaa 29149323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 33560566 - 33560518
Alignment:
Q  98 atgtatgtaaacataaatcattttacattcaactcacttttgagcaaat 146  Q
    |||||| |||||||||| || |||||||||||||||||||  |||||||    
T  33560566 atgtatctaaacataaaccaatttacattcaactcactttcaagcaaat 33560518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 36150630 - 36150662
Alignment:
Q  106 aaacataaatcattttacattcaactcactttt 138  Q
    |||||||||||| ||||||||||||||||||||    
T  36150630 aaacataaatcactttacattcaactcactttt 36150662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 3853939 - 3853982
Alignment:
Q  95 tgaatgtatgtaaacataaatcattttacattcaactcactttt 138  Q
    |||||||||  |||||||||||| ||||||||||||||||||||    
T  3853939 tgaatgtatccaaacataaatcaatttacattcaactcactttt 3853982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 15220860 - 15220817
Alignment:
Q  95 tgaatgtatgtaaacataaatcattttacattcaactcactttt 138  Q
    |||||||||  |||||||||||| ||||||||||||||||||||    
T  15220860 tgaatgtatccaaacataaatcactttacattcaactcactttt 15220817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 1763259 - 1763325
Alignment:
Q  95 tgaatgtatgtaaacataaatcattttacattcaactcacttttgagcaaattcaactttacaaaat 161  Q
    |||| |||| ||||||||||||| |||| |||||||||| |||| | |||| |||| ||||||||||    
T  1763259 tgaaggtatctaaacataaatcactttaaattcaactcaattttaaccaaaatcaattttacaaaat 1763325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 44412151 - 44412204
Alignment:
Q  84 tcactttttcgtgaatgtatgtaaacataaatcattttacattcaactcacttt 137  Q
    |||||||| | |||||| || ||| ||||||||||||||| |||||||||||||    
T  44412151 tcacttttacatgaatggatctaagcataaatcattttacgttcaactcacttt 44412204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 2213556 - 2213600
Alignment:
Q  106 aaacataaatcattttacattcaactcacttttgagcaaattcaa 150  Q
    |||||||||||| || ||||||||||||||||| |||||| ||||    
T  2213556 aaacataaatcaattcacattcaactcactttttagcaaaatcaa 2213600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 10918653 - 10918685
Alignment:
Q  106 aaacataaatcattttacattcaactcactttt 138  Q
    |||||||||||| ||||||||||||||||||||    
T  10918653 aaacataaatcactttacattcaactcactttt 10918685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 23359988 - 23359956
Alignment:
Q  106 aaacataaatcattttacattcaactcactttt 138  Q
    |||||||||||| ||||||||||||||||||||    
T  23359988 aaacataaatcactttacattcaactcactttt 23359956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 28127345 - 28127301
Alignment:
Q  106 aaacataaatcattttacattcaactcacttttgagcaaattcaa 150  Q
    |||||||||||| || ||||||||||||||||| |||||| ||||    
T  28127345 aaacataaatcaattcacattcaactcactttttagcaaaatcaa 28127301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University