View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5121_low_7 (Length: 344)
Name: NF5121_low_7
Description: NF5121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5121_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 38531457 - 38531131
Alignment:
| Q |
1 |
ctccagaatcattttcgtgatttcacttttctctttannnnnnnnggaaaacttataaaaacctacctcgttagattttctttccggaaaactttgccaa |
100 |
Q |
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| T |
38531457 |
ctccagaatcattttcgtgatttcacttttctctttattttttttggaaaacttataaaaacctacctcgttagattttctttccggaaaactttgccaa |
38531358 |
T |
|
| Q |
101 |
acatatatggtttgttaaatgcttcatgtttgttaaacctagacaaacgttattcaacaaaac-nnnnnnnncagtgaataccaccaccttcttattatt |
199 |
Q |
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| T |
38531357 |
acatatatggtttgttaaatgcttcatgtttgttaaaccttgacaaacgttattcaacaaaacaaaaaaaaacattgaataccaccaccttcttattatt |
38531258 |
T |
|
| Q |
200 |
aaatttggcataggagtgttgcttgttaacttgttatagaattacaacgctccatcatagga-------gtgttgct---tgttttctctttgatttata |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| | |||||||||||||||||||| |
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| T |
38531257 |
aaatttggcataggagtgttgcttgttaacttgttatagaattacaacgctccatcaattgaaacgattttgttggtaaatgttttctctttgatttata |
38531158 |
T |
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| Q |
290 |
attagatatttcggggaacattaactaca |
318 |
Q |
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||| |||||||||||||||||||||||| |
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| T |
38531157 |
att--atatttcggggaacattaactaca |
38531131 |
T |
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