View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5122-Insertion-1 (Length: 1045)
Name: NF5122-Insertion-1
Description: NF5122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5122-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 757; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 12 - 1040
Target Start/End: Complemental strand, 45314105 - 45313073
Alignment:
| Q |
12 |
ctcacttcaccgtgcaactgcaacaacaacaacctccaccaccatcaccagttcatccctcccgtcatcctcttgtctgctccagacacccagcacgtcg |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45314105 |
ctcacttcaccgtgcaactgcaacaacaacaacctccaccaccatcaccagttcatccctcccgtcatcctcttgtccgctccagacacccagcacgtcg |
45314006 |
T |
|
| Q |
112 |
ataaccaagacgtttttcacactccgccggatgacccaccgcttccatcttccgtcattgatgttgttgatgcttctcagtgagtttcctgagataaatc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45314005 |
ataaccaagacgtttttcacactccgccggatgacccaccgcttccatcttccgtcattgatgttgttgatgcttctcagtgagtttcctgagataaatc |
45313906 |
T |
|
| Q |
212 |
ctgatgattttagcattttggata-----------------atgttgataaggctcctatgaaaaaattgaaatttgggtttgtttctttggagaaaaat |
294 |
Q |
| |
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| T |
45313905 |
cggatgattttagcattttggataggatagggcaatttctaatgttgataaggctcctatgaaaaaattgaaatttgggtttgtttctttggagaaaaat |
45313806 |
T |
|
| Q |
295 |
gttagaaacccaacaagctgttcaaaatgatgctgaggatattaacatgattgatgttgagggaaataggtcaagtcaagtcaagaggaggagattatgg |
394 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45313805 |
gtt-gaaacccaacaagctgttcaaaatgatgctgaggatattaacatgattgatgttgagggaaata-----agtcaagtcaagaggaggagattatgg |
45313712 |
T |
|
| Q |
395 |
aaatttctagaatgcgcaagggtccggtgttggatttgatgccgctcttctttcgagaaagaaactgcaaatgaaagggggtccagggaggataaggaga |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
45313711 |
aaatttctagaatgcgcaagggtccggtgttggatttgatgccgctcttctttcgagaaagcaactgcaaatgaaagggggtccggggaggataaggaga |
45313612 |
T |
|
| Q |
495 |
aggagacggttactgtttttgatattaacctatgatgata------ttgtatggtaggattatttttagtttctatcatcttttgaatgttgactatcac |
588 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45313611 |
aggagacggttactgtttttgatattaacctatgatgatatgatatttgtatggtaggattatttttagtttctatcatcttttgaatgttgactatcac |
45313512 |
T |
|
| Q |
589 |
ttttaactgtgcttcagaacttaacttgttaacaatctccctagcttgtggatatattctgaaatagtattaaattaagctaatgttattgttgcttgtt |
688 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
45313511 |
ttttaactgtgcttcagaacttaacttgttaacaatctccctagcttgtgtatatattctgaaatagtattaaattaagctaa-------------tgtt |
45313425 |
T |
|
| Q |
689 |
tatgtctctatcatgtctaacttagatattccttccttgtttatcttctaatgttatgtttatcacgtctaataatgggcattagagtaaatcatcctta |
788 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45313424 |
tatgtctctatcatgtctaacttagatattccttctttgtttatcttctaattttatgtttatcacgtctaataat-ggcattagagtaaatcatcctta |
45313326 |
T |
|
| Q |
789 |
aagcactt-aatatttcttttgttttcaaacttttctgctgcttacccaaccgaagagaatatgatattgaccgatgatagaggattgcttcctcaccca |
887 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||| | ||||||| ||| ||| |||||||||||||||||||||||||||| |
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| T |
45313325 |
aagcacttaaatatttcttttgttttcaaacttttctgctgctta-ccaacctagaagaatataataatgaacgatgatagaggattgcttcctcaccca |
45313227 |
T |
|
| Q |
888 |
ctgatgaatataaaataaagaggt-gttaacaatcaggtaagccaaagcaatatggagatgg-tttgttcgatggcatgcatagtcatattaac-atcag |
984 |
Q |
| |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| ||||||| ||| ||| ||||||||||||||| ||||| |
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| T |
45313226 |
ctgatgaatataaaataaagagatggttaacaatcaggtaagccaaagcaatat-gagatggttttgttcaatgccatccatagtcatattaacaatcag |
45313128 |
T |
|
| Q |
985 |
gaaagtttcataacttggagggaaagaagaccaggctgtggaaaggacctatttca |
1040 |
Q |
| |
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| T |
45313127 |
gaaagtttcataactt-gagggagagaagaccaggctgtggaatgtacatatttca |
45313073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 4e-53; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 668 - 834
Target Start/End: Original strand, 54632206 - 54632378
Alignment:
| Q |
668 |
ctaatgttattgttgcttgtttatgtctctatcatgtctaacttagatattccttccttgtttatcttctaat------gttatgtttatcacgtctaat |
761 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |||||||| ||||||| |||||||||||||||| ||| |
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| T |
54632206 |
ctaatgttattgttgcttgcttatgactctatcatgtctaacttaaatattccttctttgtttatattctaattctaatgttatgtttatcacgtgcaat |
54632305 |
T |
|
| Q |
762 |
aatgggcattagagtaaatcatccttaaagcacttaa-tatttcttttgttttcaaacttttctgctgcttacc |
834 |
Q |
| |
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| T |
54632306 |
aatgg-cattagagtaaatcatccttaaagcacttaaatatttcttttgttttcaaacttttctgctgcttacc |
54632378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 54631183 - 54631353
Alignment:
| Q |
12 |
ctcacttcaccgtgcaactgcaacaacaacaacctccaccaccat--cacc-------agttcatccctcccgtcatcctcttgtctgctccagacaccc |
102 |
Q |
| |
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||||||||||| |||||||||||||||||||||| ||||||| || |||| || ||||||||||| |||||| |||| ||||||||||||| |
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| T |
54631183 |
ctcacttcaccctgcaactgcaacaacaacaaccaccaccacgatgccaccgccgccgagatcatccctcccatcatcccattgtacgctccagacaccc |
54631282 |
T |
|
| Q |
103 |
agcacgtcgataaccaagacgtttttcacactccgccggatgacccaccgcttccatcttccgtcattgat |
173 |
Q |
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| T |
54631283 |
agcacgtcgataaccaagacgtttttcacactccgccggaggacccaccgcttccatcttccgtcattgat |
54631353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 511 - 619
Target Start/End: Original strand, 54632078 - 54632182
Alignment:
| Q |
511 |
ttttgatattaacctatgatgatattgtatggtaggattatttttagtttctatcatcttttgaatgttgactatcacttttaactgtgcttcagaactt |
610 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
54632078 |
ttttgatattaacctatgatgatattttatggtaggattat----agtttctatcatcttttgaatgttgactatcacttgtaactgtggttcagaactt |
54632173 |
T |
|
| Q |
611 |
aacttgtta |
619 |
Q |
| |
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||| ||||| |
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| T |
54632174 |
aacctgtta |
54632182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 266 - 360
Target Start/End: Original strand, 54631625 - 54631721
Alignment:
| Q |
266 |
aatttgggtttgtttctttggagaaaaatgttagaaacccaacaa---gctgttcaaaatgatgctgaggatattaacatgattgatgttgagggaaa |
360 |
Q |
| |
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|||||||||||| |||||||||| |||||||| |||||||||||| | |||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
54631625 |
aatttgggtttgattctttggaggaaaatgtt-gaaacccaacaacaagttgttcaaaatgatgctgaggatgttaacatggttgatgttgagggaaa |
54631721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 883 - 1027
Target Start/End: Original strand, 54632380 - 54632525
Alignment:
| Q |
883 |
acccactgatgaatataaaataaagaggtgt-taacaatcaggtaagccaaagcaatatggagat-ggtttgttcgatggcatgcatagtcatattaac- |
979 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| | |||| || ||| ||||| || || ||||||| |
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| T |
54632380 |
acccactgatgaatataaaataaagacatggctaacaatcaggtaagccaaagcaatat-gagatagttttggtcaatgccatgcgtactcgtattaaca |
54632478 |
T |
|
| Q |
980 |
atcaggaaagtttcataacttggagggaaagaagaccaggctgtggaa |
1027 |
Q |
| |
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|||||| |||||||||||||| || |||||||| |||||||||||||| |
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| T |
54632479 |
atcagggaagtttcataactt-gaaggaaagaataccaggctgtggaa |
54632525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 438 - 498
Target Start/End: Original strand, 54631733 - 54631793
Alignment:
| Q |
438 |
gctcttctttcgagaaagaaactgcaaatgaaagggggtccagggaggataaggagaagga |
498 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| |
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| T |
54631733 |
gctcttctttcgagaaagcgactgcaaatgaaagggggtctggggaggataaggataagga |
54631793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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