View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5122-Insertion-2 (Length: 608)

Name: NF5122-Insertion-2
Description: NF5122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5122-Insertion-2
NF5122-Insertion-2
[»] chr5 (9 HSPs)
chr5 (70-608)||(30267087-30267637)
chr5 (4-512)||(29364885-29365395)
chr5 (4-42)||(30267636-30267674)
chr5 (133-186)||(8420035-8420088)
chr5 (133-186)||(32630733-32630786)
chr5 (133-176)||(15405063-15405106)
chr5 (106-167)||(14817041-14817103)
chr5 (133-169)||(5616227-5616263)
chr5 (133-169)||(23012423-23012459)
[»] chr3 (7 HSPs)
chr3 (405-511)||(25959220-25959326)
chr3 (123-176)||(17568691-17568744)
chr3 (132-186)||(21110461-21110515)
chr3 (133-186)||(8383265-8383318)
chr3 (124-169)||(21419470-21419515)
chr3 (133-169)||(21161514-21161550)
chr3 (132-176)||(28576723-28576767)
[»] chr1 (10 HSPs)
chr1 (133-186)||(5927338-5927391)
chr1 (128-167)||(17080898-17080937)
chr1 (133-184)||(21057791-21057842)
chr1 (133-176)||(43609826-43609869)
chr1 (135-180)||(8203831-8203876)
chr1 (133-182)||(32461465-32461514)
chr1 (133-186)||(38078659-38078712)
chr1 (133-186)||(41877468-41877521)
chr1 (133-186)||(46348381-46348434)
chr1 (128-164)||(44247640-44247676)
[»] chr4 (7 HSPs)
chr4 (133-184)||(51701266-51701317)
chr4 (133-183)||(20119953-20120003)
chr4 (133-186)||(38847010-38847063)
chr4 (134-171)||(44796975-44797012)
chr4 (135-183)||(18783987-18784035)
chr4 (133-169)||(19230324-19230360)
chr4 (128-176)||(19262932-19262980)
[»] chr8 (7 HSPs)
chr8 (133-184)||(21465420-21465471)
chr8 (133-182)||(6252495-6252544)
chr8 (133-186)||(22596002-22596055)
chr8 (110-178)||(2517093-2517160)
chr8 (107-166)||(11815810-11815870)
chr8 (133-169)||(12606844-12606880)
chr8 (139-183)||(27733861-27733905)
[»] chr7 (5 HSPs)
chr7 (113-167)||(31753779-31753834)
chr7 (133-186)||(21880160-21880213)
chr7 (133-186)||(25481910-25481963)
chr7 (124-184)||(7058425-7058485)
chr7 (128-176)||(27945044-27945092)
[»] chr2 (6 HSPs)
chr2 (135-182)||(1527887-1527934)
chr2 (131-166)||(3103540-3103575)
chr2 (133-184)||(15098105-15098156)
chr2 (133-176)||(44605147-44605190)
chr2 (124-165)||(5526792-5526833)
chr2 (139-183)||(18512143-18512187)
[»] scaffold0011 (1 HSPs)
scaffold0011 (133-167)||(240038-240072)
[»] chr6 (6 HSPs)
chr6 (128-182)||(6284663-6284717)
chr6 (133-186)||(426512-426565)
chr6 (126-167)||(2820381-2820422)
chr6 (133-177)||(4118340-4118384)
chr6 (133-165)||(17422274-17422306)
chr6 (124-184)||(31384919-31384979)
[»] scaffold0036 (1 HSPs)
scaffold0036 (107-176)||(9977-10045)


Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 70 - 608
Target Start/End: Complemental strand, 30267637 - 30267087
Alignment:
Q  70 tatacctatgaaccacctacgtaaacacggtcacatggacacgacactgatacatgataccagtaataatttgagaaaataatataattgaatgtaatta 169  Q
    |||||||||||| |||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  30267637 tatacctatgaagcacctacgtaaacacgatcacacaaacacgacactgatacatgataccagtaataatttgagaaaataatataattaaatgtaatca 30267538  T
Q  170 caagtgttagtgtcggagactagcactggttagaaaagcaactgcaattaaggattcatcagat----acatttgaccgcaattcttccgaatatatcaa 265  Q
    |||||||||||||  ||||||||||||||| ||| |||||||||||||||||| | ||||||||    ||||||||||||||||||||||||||||||||    
T  30267537 caagtgttagtgtgagagactagcactggtcagacaagcaactgcaattaaggctgcatcagatcgatacatttgaccgcaattcttccgaatatatcaa 30267438  T
Q  266 tgatcacagccacaatttaaaactttttgttagcaatcaacttaaagctcagaaattttttctagactcaccaagaatgtgaaagtggagagaggatctc 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30267437 tgatcacagccacaatttaaaactttttgttagcaatcaacttaaagctcagaaattttttctagactcaccaagaatgtgaaagtggagagaggatctc 30267338  T
Q  366 ccctaaccaattgtgtctccacattaggtgctgcagcagatatcatacaaatcaaagactgccattggttccttcccaacgaatcaccaacaaacatcac 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30267337 ccctaaccaattgtgtctccacattaggtgctgcagcagatatcatacaaatcaaagactgccattggttccttcctaacgaatcaccaacaaacatcac 30267238  T
Q  466 actttttcctttcatcttcaacaaaaactcaactccattgaacctaccattacaaaac-----------accatcattcaaattatactaagcaaccaca 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||           |||||||||||||||||||||||||||||||    
T  30267237 actttttcctttcatcttcaacaaaaactcaactccattgaacctgccattacaaaacaccacaaaaacaccatcattcaaattatactaagcaaccaca 30267138  T
Q  555 cactacattatcttaaaaacacaatattttgctatgaagcacaaacccaaacac 608  Q
    |||||   |||||||||||||| |||||||||||||||||||||||||||||||    
T  30267137 cacta---tatcttaaaaacactatattttgctatgaagcacaaacccaaacac 30267087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 4 - 512
Target Start/End: Original strand, 29364885 - 29365395
Alignment:
Q  4 aacagtgtgaaatgccaaattgggtattggtatttggtagttatcaacaaagtattttgggttatctatacctatgaaccacctacgtaaacacggtcac 103  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||||||| ||||    
T  29364885 aacagtgtgaaatgccaaatggggtattggtatttggtagttatcaacaaagtattttattttatctatacctatgaagcacctacgtaaacacgctcac 29364984  T
Q  104 atggacacgacactgatacatgataccagtaataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcggagac--tagcactggtta 201  Q
    | |||||||||||  |||||||| |   | |||||||| |||||||  ||||||| |||||||| ||| |||||||| || |||||  |||||||||| |    
T  29364985 acggacacgacacccatacatgacaatggcaataatttaagaaaatggtataattaaatgtaatcacaggtgttagtatcagagacactagcactggtaa 29365084  T
Q  202 gaaaagcaactgcaattaaggattcatcagatacatttgaccgcaattcttccgaatatatcaatgatcacagccacaatttaaaactttttgttagcaa 301  Q
    || | ||||||||||| ||||   ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  29365085 gacacgcaactgcaatcaaggccgcatcagatacatttgaccgcaattcttccaaatatatcaatgatcaaagccacaatttaaaactttttgttagcaa 29365184  T
Q  302 tcaacttaaagctcagaaattttttctagactcaccaagaatgtgaaagtggagagaggatctcccctaaccaattgtgtctccacattaggtgctgcag 401  Q
    || ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||    
T  29365185 tctacttaaagctcaggaattttttctatactcaccaagaatgtgaaagtggagagaggatctcccctaaccaattctgtctccacacgaggtgctgcag 29365284  T
Q  402 cagatatcatacaaatcaaagactgccattggttccttcccaacgaatcaccaacaaacatcacactttttcctttcatcttcaacaaaaactcaactcc 501  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||    
T  29365285 cagatatcatataaatcaaagactgccattggttccttcctaacgaatcaccaacaaacatcacattttttcctttcatcttcatcagaaactcaactcc 29365384  T
Q  502 attgaacctac 512  Q
     ||||||||||    
T  29365385 gttgaacctac 29365395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 30267674 - 30267636
Alignment:
Q  4 aacagtgtgaaatgccaaattgggtattggtatttggta 42  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30267674 aacagtgtgaaatgccaaattgggtattggtatttggta 30267636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 8420035 - 8420088
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 186  Q
    ||||||||||| ||||||| |||||| |||||||||||||||||  ||||||||    
T  8420035 taataatttgaaaaaataacataattcaatgtaattacaagtgtcggtgtcgga 8420088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 32630786 - 32630733
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 186  Q
    ||||||||||||||||| |||||||| |||||||||| | |||| |||||||||    
T  32630786 taataatttgagaaaattatataattcaatgtaattatatgtgtcagtgtcgga 32630733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 15405106 - 15405063
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgt 176  Q
    ||||||||||| ||||| |||||||| |||||||||||||||||    
T  15405106 taataatttgaaaaaatcatataattcaatgtaattacaagtgt 15405063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 14817041 - 14817103
Alignment:
Q  106 ggacacgacactgatacat-gataccagtaataatttgagaaaataatataattgaatgtaat 167  Q
    ||||||| ||||||||||| || ||||||||||||||||||||||  ||| ||| ||||||||    
T  14817041 ggacacggcactgatacattgacaccagtaataatttgagaaaatgttattatttaatgtaat 14817103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 5616263 - 5616227
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaatta 169  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  5616263 taataatttgaaaaaataatatagttgaatgtaatta 5616227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 23012459 - 23012423
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaatta 169  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  23012459 taataatttgagaaaatcatataatttaatgtaatta 23012423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 405 - 511
Target Start/End: Complemental strand, 25959326 - 25959220
Alignment:
Q  405 atatcatacaaatcaaagactgccattggttccttcccaacgaatcaccaacaaacatcacactttttcctttcatcttcaacaaaaactcaactccatt 504  Q
    |||||||||||||||| || | |||||| ||||| ||||| ||||||||||||||||| | ||||||||| |||||   || || ||||| |||||||||    
T  25959326 atatcatacaaatcaatgattcccattgattcctccccaaagaatcaccaacaaacattatactttttcccttcattcccatcagaaactgaactccatt 25959227  T
Q  505 gaaccta 511  Q
    |||||||    
T  25959226 gaaccta 25959220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 17568744 - 17568691
Alignment:
Q  123 atgataccagtaataatttgagaaaataatataattgaatgtaattacaagtgt 176  Q
    |||| |||| ||||||||||||||||| | |||||| |||||||||||||||||    
T  17568744 atgacaccattaataatttgagaaaattacataatttaatgtaattacaagtgt 17568691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 21110515 - 21110461
Alignment:
Q  132 gtaataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 186  Q
    |||||||||||||||||| | |||||||||||||||   | ||||||||||||||    
T  21110515 gtaataatttgagaaaatgacataattgaatgtaatattatgtgttagtgtcgga 21110461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 8383265 - 8383318
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 186  Q
    ||||||||||||||||| |||||||| | |||||||| ||||||  ||||||||    
T  8383265 taataatttgagaaaatcatataattcagtgtaattataagtgtcggtgtcgga 8383318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 21419515 - 21419470
Alignment:
Q  124 tgataccagtaataatttgagaaaataatataattgaatgtaatta 169  Q
    |||||||  ||||||||| |||||||||||||||| ||||||||||    
T  21419515 tgataccgttaataatttaagaaaataatataattcaatgtaatta 21419470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 21161550 - 21161514
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaatta 169  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  21161550 taataatttgaaaaaataatatagttgaatgtaatta 21161514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 28576723 - 28576767
Alignment:
Q  132 gtaataatttgagaaaataatataattgaatgtaattacaagtgt 176  Q
    |||||||||||||||||| | | ||||||||||||||||| ||||    
T  28576723 gtaataatttgagaaaatgacaaaattgaatgtaattacatgtgt 28576767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 5927391 - 5927338
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 186  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||    
T  5927391 taataatttgaaaaaatcatataatttaatgtaattacaagtgtcagtgtcgga 5927338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 167
Target Start/End: Complemental strand, 17080937 - 17080898
Alignment:
Q  128 accagtaataatttgagaaaataatataattgaatgtaat 167  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  17080937 accaataataatttgagaaaataacataattgaatgtaat 17080898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 21057791 - 21057842
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcg 184  Q
    ||||||||| ||||||||| |||||||||||||||  || ||||||||||||    
T  21057791 taataattttagaaaataacataattgaatgtaatcgcatgtgttagtgtcg 21057842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 43609869 - 43609826
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgt 176  Q
    ||||||||||||||||||| ||||||||||||||| ||| ||||    
T  43609869 taataatttgagaaaataacataattgaatgtaatcacatgtgt 43609826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 8203831 - 8203876
Alignment:
Q  135 ataatttgagaaaataatataattgaatgtaattacaagtgttagt 180  Q
    ||||||||||||||| | |||| |||||||||| ||||||||||||    
T  8203831 ataatttgagaaaatgacataagtgaatgtaatcacaagtgttagt 8203876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 32461514 - 32461465
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgt 182  Q
    ||||||||||| ||||| | |||||| |||||||||||||||||| ||||    
T  32461514 taataatttgaaaaaatcacataatttaatgtaattacaagtgttggtgt 32461465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 38078712 - 38078659
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 186  Q
    ||||||||||| ||||| | |||||| |||||||||||||||||  ||||||||    
T  38078712 taataatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcgga 38078659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 41877521 - 41877468
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 186  Q
    ||||||||||||||||| | |||||| | |||||||||||||||  ||||||||    
T  41877521 taataatttgagaaaattacataatttagtgtaattacaagtgtcggtgtcgga 41877468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 46348434 - 46348381
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 186  Q
    ||||||||||| ||||| |||||||| | |||||||||||||||  ||||||||    
T  46348434 taataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgtcgga 46348381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 44247676 - 44247640
Alignment:
Q  128 accagtaataatttgagaaaataatataattgaatgt 164  Q
    |||||||||||||||||||||||  ||||||||||||    
T  44247676 accagtaataatttgagaaaatagaataattgaatgt 44247640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 51701266 - 51701317
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcg 184  Q
    ||||||||||| ||||| | |||||||| |||||||||||||||||||||||    
T  51701266 taataatttgaaaaaattacataattgagtgtaattacaagtgttagtgtcg 51701317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 20119953 - 20120003
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtc 183  Q
    ||||||||||||||||| | |||||| |||||||| ||| |||||||||||    
T  20119953 taataatttgagaaaatgaaataatttaatgtaatcacatgtgttagtgtc 20120003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 38847063 - 38847010
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 186  Q
    ||||||||||| ||||| |||| ||| | ||||||||||||||| |||||||||    
T  38847063 taataatttgaaaaaatcatattattcagtgtaattacaagtgtcagtgtcgga 38847010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 44797012 - 44796975
Alignment:
Q  134 aataatttgagaaaataatataattgaatgtaattaca 171  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  44797012 aataatttgagaaaataacataattcaatgtaattaca 44796975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 18783987 - 18784035
Alignment:
Q  135 ataatttgagaaaataatataattgaatgtaattacaagtgttagtgtc 183  Q
    ||||||||||||||| |  |||||||||||||||||| ||||| |||||    
T  18783987 ataatttgagaaaatgaagtaattgaatgtaattacacgtgttggtgtc 18784035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 19230360 - 19230324
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaatta 169  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  19230360 taataatttgagaaaataacataattcaatgtaatta 19230324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 19262980 - 19262932
Alignment:
Q  128 accagtaataatttgagaaaataatataattgaatgtaattacaagtgt 176  Q
    ||||||||||||||||||| || | ||||||||||||||| ||| ||||    
T  19262980 accagtaataatttgagaagatgacataattgaatgtaatcacatgtgt 19262932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 21465420 - 21465471
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcg 184  Q
    ||||||||||| ||||| ||||||||  ||||||||||||||||| ||||||    
T  21465420 taataatttgaaaaaatcatataattcgatgtaattacaagtgttggtgtcg 21465471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 6252544 - 6252495
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgt 182  Q
    |||||||||||||||||||| ||||| |||||||| |||  |||||||||    
T  6252544 taataatttgagaaaataatttaattaaatgtaatcacatttgttagtgt 6252495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 22596002 - 22596055
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 186  Q
    ||||||||| | ||||||| |||||| | |||||||||||||||| ||||||||    
T  22596002 taataatttaaaaaaataacataattcagtgtaattacaagtgttggtgtcgga 22596055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 2517093 - 2517160
Alignment:
Q  110 acgacactgatacatgataccagtaataatttgagaaaataatataattgaatgtaattacaagtgtta 178  Q
    |||||||||| | |||| ||| |||||||||||||||||| |  ||||||||||||| |||| ||||||    
T  2517093 acgacactgaca-atgacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgtta 2517160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 11815810 - 11815870
Alignment:
Q  107 gacacgacactgatacat-gataccagtaataatttgagaaaataatataattgaatgtaa 166  Q
    ||||||||||||| || | || |||| |||||||||||||||||  |||||||||||||||    
T  11815810 gacacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 11815870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 12606880 - 12606844
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaatta 169  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  12606880 taataatttgagaaaatcatataattcaatgtaatta 12606844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 27733861 - 27733905
Alignment:
Q  139 tttgagaaaataatataattgaatgtaattacaagtgttagtgtc 183  Q
    ||||||||||| |||||||| |||||||| ||||||||| |||||    
T  27733861 tttgagaaaatgatataattcaatgtaatcacaagtgttggtgtc 27733905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 31753834 - 31753779
Alignment:
Q  113 acactgatacat-gataccagtaataatttgagaaaataatataattgaatgtaat 167  Q
    ||||| |||||| |||||||||| |||||||||||||| | |||||||||||||||    
T  31753834 acactaatacatcgataccagtagtaatttgagaaaattaaataattgaatgtaat 31753779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 21880160 - 21880213
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 186  Q
    ||||||||||||||||| | |||||| | |||||||||||||||  ||||||||    
T  21880160 taataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcgga 21880213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 25481910 - 25481963
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 186  Q
    ||||||||||| ||||| | |||||| | |||||||||||||||| ||||||||    
T  25481910 taataatttgaaaaaatcacataattcagtgtaattacaagtgttggtgtcgga 25481963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 7058425 - 7058485
Alignment:
Q  124 tgataccagtaataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcg 184  Q
    |||||| | ||||||||||| ||||| || ||||| | |||||||||||||||| ||||||    
T  7058425 tgatacaactaataatttgaaaaaatcatgtaattcagtgtaattacaagtgttggtgtcg 7058485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 27945044 - 27945092
Alignment:
Q  128 accagtaataatttgagaaaataatataattgaatgtaattacaagtgt 176  Q
    |||| ||||||||||||||||| | |||||| | |||||||||||||||    
T  27945044 accactaataatttgagaaaattacataattcagtgtaattacaagtgt 27945092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 1527887 - 1527934
Alignment:
Q  135 ataatttgagaaaataatataattgaatgtaattacaagtgttagtgt 182  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||| ||||    
T  1527887 ataatttgagaaaataataaaattgaatgtaataacatgtgttggtgt 1527934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 166
Target Start/End: Complemental strand, 3103575 - 3103540
Alignment:
Q  131 agtaataatttgagaaaataatataattgaatgtaa 166  Q
    ||||||||||||||||||||| ||||||||||||||    
T  3103575 agtaataatttgagaaaataagataattgaatgtaa 3103540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 15098156 - 15098105
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcg 184  Q
    |||||||||||||||| ||  |||||||||||||||| |||||| |||||||    
T  15098156 taataatttgagaaaaaaaattaattgaatgtaattataagtgtcagtgtcg 15098105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 44605190 - 44605147
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgt 176  Q
    ||||||||||||||||||| |||||| |||||||||||| ||||    
T  44605190 taataatttgagaaaataacataattcaatgtaattacatgtgt 44605147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 5526833 - 5526792
Alignment:
Q  124 tgataccagtaataatttgagaaaataatataattgaatgta 165  Q
    ||||||| |||||||||||||||||||| ||||||| |||||    
T  5526833 tgataccggtaataatttgagaaaataaaataattgtatgta 5526792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 18512187 - 18512143
Alignment:
Q  139 tttgagaaaataatataattgaatgtaattacaagtgttagtgtc 183  Q
    |||||||||||||||||||| |||||||| ||| |||| ||||||    
T  18512187 tttgagaaaataatataattcaatgtaatcacatgtgtcagtgtc 18512143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 167
Target Start/End: Complemental strand, 240072 - 240038
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaat 167  Q
    |||||||||||||||||||||||||| ||||||||    
T  240072 taataatttgagaaaataatataattcaatgtaat 240038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 6284717 - 6284663
Alignment:
Q  128 accagtaataatttgagaaaataatataattgaatgtaattacaagtgttagtgt 182  Q
    |||| ||||||||||||||||| | |||||||||| |||| ||| ||||||||||    
T  6284717 accattaataatttgagaaaatgacataattgaatttaatcacatgtgttagtgt 6284663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 426565 - 426512
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 186  Q
    ||||||||||| ||||| | |||||| |||||||||||||||||  ||||||||    
T  426565 taataatttgaaaaaatcacataattaaatgtaattacaagtgtcggtgtcgga 426512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 2820422 - 2820381
Alignment:
Q  126 ataccagtaataatttgagaaaataatataattgaatgtaat 167  Q
    |||||| ||||||||||||||||||| |||| ||||||||||    
T  2820422 ataccaataataatttgagaaaataaaataaatgaatgtaat 2820381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 4118384 - 4118340
Alignment:
Q  133 taataatttgagaaaataatataattgaatgtaattacaagtgtt 177  Q
    ||||||||||| ||||| | |||||| ||||||||||||||||||    
T  4118384 taataatttgaaaaaatcacataattaaatgtaattacaagtgtt 4118340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 17422306 - 17422274
Alignment:
Q  133 taataatttgagaaaataatataattgaatgta 165  Q
    ||||||||||||||||| |||||||||||||||    
T  17422306 taataatttgagaaaatgatataattgaatgta 17422274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 31384919 - 31384979
Alignment:
Q  124 tgataccagtaataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcg 184  Q
    |||||| | ||||||||||| ||||| | |||||| | ||||||||||||||| |||||||    
T  31384919 tgatacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcg 31384979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 9977 - 10045
Alignment:
Q  107 gacacgacactgatacatgataccagtaataatttgagaaaataatataattgaatgtaattacaagtgt 176  Q
    |||||||||| || |||| |||||  || |||||||||||||| ||||||||||||||||| ||| ||||    
T  9977 gacacgacacagacacat-ataccgttagtaatttgagaaaattatataattgaatgtaatgacatgtgt 10045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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