View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5122-Insertion-3 (Length: 572)
Name: NF5122-Insertion-3
Description: NF5122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5122-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 105; Significance: 4e-52; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 110 - 245
Target Start/End: Original strand, 7496623 - 7496759
Alignment:
| Q |
110 |
cccaaagctcaagctatgattcagatttcagacatgaaagagtgtcaagtttaattagagttaattcagtagtaagagtgcatcataaac-ttgaaatat |
208 |
Q |
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| T |
7496623 |
cccagagctcaagctatgattcagatttcagacatgaaagagtgtcaagtttaatgagagttaattcagtactaaaactgcatcataaactttgaaatat |
7496722 |
T |
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| Q |
209 |
ccaatagtaacaattgaaaataaatatggtcttttat |
245 |
Q |
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| T |
7496723 |
ccaatagtaacaattgaaaataaatagggtcttttat |
7496759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 418 - 568
Target Start/End: Original strand, 7499917 - 7500067
Alignment:
| Q |
418 |
gtagactagagtgaaagagtaaaacacatccaatccaattaccccaattgttctaaagatgaagacctagtcgatttaaacaaaatatttaaaaattggt |
517 |
Q |
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| T |
7499917 |
gtagactagagtgaagaagtaaaacacatccaatccaattaccacaattgttctaaccatgaaaacctagtagatttaaatgaaatatttaaaaattggt |
7500016 |
T |
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| Q |
518 |
acaaaccttttgaatcaagtacaatcctctccccattttgaattgcattca |
568 |
Q |
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| T |
7500017 |
ataaaccttttcaatcaaatataatcctctctccattttgaattgcattca |
7500067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 7496545 - 7496626
Alignment:
| Q |
10 |
aggatctgcttgtgttattaagtaaagaacgatagtaggagatggaaagataacgtggagagtagcttgatgttcccgccca |
91 |
Q |
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| T |
7496545 |
aggatccgcctgtgttattaagtagagatagatagtaggagaaggaaagatattgttgagagtagcgtgatgttcccgccca |
7496626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 356
Target Start/End: Original strand, 7499371 - 7499451
Alignment:
| Q |
276 |
cgcagcctagaaatcaaaggataatgtattattgtttaccactttacttgttatctaatctcatactaccttcttccctaa |
356 |
Q |
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| T |
7499371 |
cgcaacctcgaaatcaatggataatgtattattgcattccacataacttgctatctaatctcatattaccttcgtccctaa |
7499451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 7499539 - 7499580
Alignment:
| Q |
366 |
aatttcttaatgaattaattatttctaaaacaacatatctat |
407 |
Q |
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| T |
7499539 |
aatttcttagtgaattaattagttctaaaacaacatatctat |
7499580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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