View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5122-Insertion-4 (Length: 546)
Name: NF5122-Insertion-4
Description: NF5122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5122-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 44695408 - 44695221
Alignment:
| Q |
8 |
attaattaatgttttgtacggcaggaatggtgaaactttgcctcaaatatcaaaggaatacataagagtaaagtaagtggtgcaagttagcatgcatggc |
107 |
Q |
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| T |
44695408 |
attaattaatgttttgtacggcaggaatggtgaaactttgcctcaaatatcaaaggaatacataagagtaaagtaagtggtgcaagttagcatgcatggc |
44695309 |
T |
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| Q |
108 |
tgatcgatccatcatatcaacattacatttttccattttgccatgatgatgcacattgaaatgagagaaaaagctaacccttaattat |
195 |
Q |
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| T |
44695308 |
tgatcgatccatcatatcaacattacatttttccattttgccatgatgatgcacattgaaatgagagaaaaagctaacccttaattat |
44695221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 441 - 546
Target Start/End: Complemental strand, 44694990 - 44694885
Alignment:
| Q |
441 |
cttattactacatctatcccatcaatctctctatttctatcttccaagcagcggttgggggtgtattacgggtttatattgatcactttcctcttcaatc |
540 |
Q |
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| T |
44694990 |
cttattattacatctatctcatcactctctctgtttctatcttccaagcagcggttgggggtgtattatgggtttatattgatcactttcctcttcaatc |
44694891 |
T |
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| Q |
541 |
tttttg |
546 |
Q |
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| T |
44694890 |
tttttg |
44694885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 337 - 415
Target Start/End: Complemental strand, 44695063 - 44694985
Alignment:
| Q |
337 |
aaatgattgtacaaatattatttctctatatttaaacatctccaacatttaaatgtttactatttattattatcttatt |
415 |
Q |
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| T |
44695063 |
aaataattgtacaaatatcatttctctatatttaaacatctccaacacttaaatatttactatttattattatcttatt |
44694985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 363
Target Start/End: Complemental strand, 40670988 - 40670955
Alignment:
| Q |
330 |
ttgtcacaaatgattgtacaaatattatttctct |
363 |
Q |
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| T |
40670988 |
ttgtcacaaatggttgtacaaatattatttctct |
40670955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 12102748 - 12102785
Alignment:
| Q |
330 |
ttgtcacaaatgattgtacaaatattatttctctatat |
367 |
Q |
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| T |
12102748 |
ttgtcacaaatgattgaacaaatatcatttctctatat |
12102785 |
T |
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