View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5122_high_1 (Length: 1149)

Name: NF5122_high_1
Description: NF5122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5122_high_1
NF5122_high_1
[»] chr3 (9 HSPs)
chr3 (7-360)||(44696277-44696631)
chr3 (440-658)||(44695974-44696197)
chr3 (697-865)||(44695757-44695926)
chr3 (932-1149)||(44695473-44695690)
chr3 (826-865)||(4759936-4759975)
chr3 (826-865)||(8715587-8715626)
chr3 (826-865)||(9067474-9067513)
chr3 (826-865)||(44570472-44570511)
chr3 (826-865)||(46317470-46317509)
[»] chr7 (2 HSPs)
chr7 (801-860)||(43958174-43958233)
chr7 (834-863)||(30538565-30538594)
[»] chr4 (2 HSPs)
chr4 (826-865)||(23765562-23765601)
chr4 (828-865)||(32131128-32131165)
[»] chr2 (1 HSPs)
chr2 (826-861)||(23685742-23685777)
[»] chr1 (3 HSPs)
chr1 (802-865)||(47655454-47655517)
chr1 (826-865)||(50154457-50154496)
chr1 (800-865)||(34874526-34874590)
[»] chr8 (1 HSPs)
chr8 (932-981)||(19389281-19389329)


Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 7 - 360
Target Start/End: Complemental strand, 44696631 - 44696277
Alignment:
Q  7 tcgaagaaaatagtaagtcaaaacccaatttcagcttcttcttcacaaacagtactaagctgccatcaaataggattagggtttgaagata-gggtttag 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  44696631 tcgaagaaaatagtaagtcaaaacccaatttcagcttcttcttcacaaacagtactaagctgccctcaaataggattagggtttgaagataagggtttag 44696532  T
Q  106 gtttagaatcaattagaaaaggtaaagaaggattggaaggcttgaattgctataatgaccatcatcataatggcatgttatcatcaccaccatcatcatc 205  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44696531 gtttagaatcaattagaaaaggtaaagaaggattagaaggcttgaattgctataatgaccatcatcataatggcatgttatcatcaccaccatcatcatc 44696432  T
Q  206 ctcatgtcaaattatgaatcctcgtggtgaagacttggctacaccgattcctagtgattctcatcattacttcgccggatcaaataatgttaatcatcat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44696431 ctcatgtcaaattatgaatcctcgtggtgaagacttggctacaccgattcctagtgattctcatcattacttcgccggatcaaataatgttaatcatcat 44696332  T
Q  306 cacaaccaatctggtttgtggtttacgctacgctcctttaccaaccggtgagcta 360  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44696331 cgcaaccaatctggtttgtggtttacgctacgctcctttaccaaccggtgagcta 44696277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 7e-80
Query Start/End: Original strand, 440 - 658
Target Start/End: Complemental strand, 44696197 - 44695974
Alignment:
Q  440 gtaattgaacactctcaactgcaaagtctcaatttaaattcgagtgttcattttaacgatatcaacattgtcggttagttgagttaattttta-ccgata 538  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  44696197 gtaattgaacactctcaactgcaaagtctcagtttaaattcgagtgttcattttaaccatatcaacattgtcggttagttgagttaatttttaaccgata 44696098  T
Q  539 aacaaca-----tcnnnnnnnagggaaaacaacaaatgtttaaatctttgttttcctctctataaatattagaaaataagcatttgtttttccaattatc 633  Q
    |||||||     |        |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44696097 aacaacaatttttttttttttagggaaaacaacaaatatttaaatctttgttttcctctctataaatattagaaaataagcatttg-ttttccaattatc 44695999  T
Q  634 tttgatatagtataatttaagagaa 658  Q
    |||||||||||||||||||||||||    
T  44695998 tttgatatagtataatttaagagaa 44695974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 9e-67
Query Start/End: Original strand, 697 - 865
Target Start/End: Complemental strand, 44695926 - 44695757
Alignment:
Q  697 atgatcattgttactggagtatttatgtaaagtcttcggtcatattaagaaaatgtcatgttaaccagtacccggcggaagcaaatatg-taatatttga 795  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||||    
T  44695926 atgatcattgttactggagtatttatgtaatgtcttcggtcacattaaaaaaatgtcatgttaaccagtgccccgcggaagcaaatatggtaatatttga 44695827  T
Q  796 agtttaagggttttgttaaccattgccttgaggaagctaaaagtaacatgtttgcattgatttcaacaac 865  Q
    ||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  44695826 agtttaagggtcttgttaaccattgctttgaggaagccaaaagtaacatgtttgcattgatttcaacaac 44695757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 932 - 1149
Target Start/End: Complemental strand, 44695690 - 44695473
Alignment:
Q  932 atcccctcatccaatgcccccaagggcaatggttaacattctccaaaatttaaaaagtannnnnnnnnacttaaaatttctttatttagcatccttaacc 1031  Q
    ||||||| |||||||| ||| || | ||||| ||| ||||||||||||||| |||| ||         ||||||||||| || |||||||||||||||||    
T  44695690 atccccttatccaatgtccc-aatgacaatgattagcattctccaaaattttaaaaatatttttttttacttaaaattttttcatttagcatccttaacc 44695592  T
Q  1032 aatgtttccggctctggttaacattttccnnnnnnnn-ttgtatgataataaatgattgtnnnnnnntatttagactttgttggtattaatttagtgagc 1130  Q
    | |||  | || |||||||||||||||||         ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  44695591 agtgtcccgggatctggttaacattttcccaaaaaaaattgtatgataataaatgattgtaaaaaaatatttagactttgttggtattaatttagtgagc 44695492  T
Q  1131 atcacagaggacacttttt 1149  Q
    |||||| ||||||||||||    
T  44695491 atcacaaaggacacttttt 44695473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 826 - 865
Target Start/End: Complemental strand, 4759975 - 4759936
Alignment:
Q  826 aggaagctaaaagtaacatgtttgcattgatttcaacaac 865  Q
    ||||||| ||||||||||||||||||||| ||||||||||    
T  4759975 aggaagccaaaagtaacatgtttgcattggtttcaacaac 4759936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 826 - 865
Target Start/End: Complemental strand, 8715626 - 8715587
Alignment:
Q  826 aggaagctaaaagtaacatgtttgcattgatttcaacaac 865  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  8715626 aggaagctaaaagtagcatgtttgcattggtttcaacaac 8715587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 826 - 865
Target Start/End: Complemental strand, 9067513 - 9067474
Alignment:
Q  826 aggaagctaaaagtaacatgtttgcattgatttcaacaac 865  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  9067513 aggaagctaaaagtagcatgtttgcattggtttcaacaac 9067474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 826 - 865
Target Start/End: Complemental strand, 44570511 - 44570472
Alignment:
Q  826 aggaagctaaaagtaacatgtttgcattgatttcaacaac 865  Q
    ||||||| ||||||| ||||||||||||||||||||||||    
T  44570511 aggaagccaaaagtagcatgtttgcattgatttcaacaac 44570472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 826 - 865
Target Start/End: Original strand, 46317470 - 46317509
Alignment:
Q  826 aggaagctaaaagtaacatgtttgcattgatttcaacaac 865  Q
    ||||||| ||||||||||||||||||||| ||||||||||    
T  46317470 aggaagccaaaagtaacatgtttgcattggtttcaacaac 46317509  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 801 - 860
Target Start/End: Complemental strand, 43958233 - 43958174
Alignment:
Q  801 aagggttttgttaaccattgccttgaggaagctaaaagtaacatgtttgcattgatttca 860  Q
    |||||| ||| ||||||||| |||||| ||  |||||||||||||||||||||| |||||    
T  43958233 aagggtcttgctaaccattgtcttgagaaatttaaaagtaacatgtttgcattggtttca 43958174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 834 - 863
Target Start/End: Complemental strand, 30538594 - 30538565
Alignment:
Q  834 aaaagtaacatgtttgcattgatttcaaca 863  Q
    ||||||||||||||||||||||||||||||    
T  30538594 aaaagtaacatgtttgcattgatttcaaca 30538565  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 826 - 865
Target Start/End: Original strand, 23765562 - 23765601
Alignment:
Q  826 aggaagctaaaagtaacatgtttgcattgatttcaacaac 865  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  23765562 aggaagctaaaagtagcatgtttgcattggtttcaacaac 23765601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 828 - 865
Target Start/End: Original strand, 32131128 - 32131165
Alignment:
Q  828 gaagctaaaagtaacatgtttgcattgatttcaacaac 865  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  32131128 gaagttaaaagtaacatgtttgcattggtttcaacaac 32131165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 826 - 861
Target Start/End: Complemental strand, 23685777 - 23685742
Alignment:
Q  826 aggaagctaaaagtaacatgtttgcattgatttcaa 861  Q
    ||||||| ||||||||||||||||||||||||||||    
T  23685777 aggaagccaaaagtaacatgtttgcattgatttcaa 23685742  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 802 - 865
Target Start/End: Complemental strand, 47655517 - 47655454
Alignment:
Q  802 agggttttgttaaccattgccttgaggaagctaaaagtaacatgtttgcattgatttcaacaac 865  Q
    ||||| ||| ||||||||||| | ||||||  ||||||| ||||||||||||| ||||||||||    
T  47655517 agggtcttgctaaccattgccctaaggaaggcaaaagtagcatgtttgcattggtttcaacaac 47655454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 826 - 865
Target Start/End: Original strand, 50154457 - 50154496
Alignment:
Q  826 aggaagctaaaagtaacatgtttgcattgatttcaacaac 865  Q
    ||||||| ||||||||||||||||||||| ||||||||||    
T  50154457 aggaagccaaaagtaacatgtttgcattggtttcaacaac 50154496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 800 - 865
Target Start/End: Original strand, 34874526 - 34874590
Alignment:
Q  800 taagggttttgttaaccattgccttgaggaagctaaaagtaacatgtttgcattgatttcaacaac 865  Q
    ||||||| ||| |||||||||  || ||||||| ||||||| ||||||||||||| ||||||||||    
T  34874526 taagggtcttgctaaccattgg-ttaaggaagccaaaagtagcatgtttgcattggtttcaacaac 34874590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 932 - 981
Target Start/End: Complemental strand, 19389329 - 19389281
Alignment:
Q  932 atcccctcatccaatgcccccaagggcaatggttaacattctccaaaatt 981  Q
    ||||||| |||||||||||| |||||||||||||| |||||||| |||||    
T  19389329 atccccttatccaatgcccc-aagggcaatggttagcattctcctaaatt 19389281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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