View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5122_high_3 (Length: 419)

Name: NF5122_high_3
Description: NF5122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5122_high_3
NF5122_high_3
[»] chr1 (6 HSPs)
chr1 (18-417)||(251310-251709)
chr1 (18-417)||(235012-235422)
chr1 (18-417)||(246666-247067)
chr1 (18-337)||(8814358-8814691)
chr1 (18-299)||(231373-231663)
chr1 (372-409)||(8814274-8814311)
[»] chr6 (6 HSPs)
chr6 (368-417)||(212988-213037)
chr6 (369-417)||(7012987-7013035)
chr6 (369-417)||(7029980-7030028)
chr6 (371-417)||(7025925-7025971)
chr6 (195-279)||(7041474-7041558)
chr6 (369-417)||(9170969-9171017)
[»] chr3 (4 HSPs)
chr3 (212-298)||(41985623-41985709)
chr3 (368-417)||(9494736-9494785)
chr3 (211-279)||(9343839-9343907)
chr3 (16-49)||(9442101-9442134)
[»] chr5 (3 HSPs)
chr5 (177-246)||(18571068-18571137)
chr5 (368-417)||(18571268-18571317)
chr5 (369-417)||(33541810-33541858)


Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 251709 - 251310
Alignment:
Q  18 attagaaacctttcaatgcaagataacatactttgctactaattcagcttctttatccgaggtgtacggaacaatttagaatatttaggataactggaca 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  251709 attagaaacctttcaatgcaagataacatactttgttactaattcagcttctttatccgaggtgtacggaacaatttagaatatttaggataactggaca 251610  T
Q  118 aatccaaaacccgaccatcatccaagtccaaaaaagaggtcttacaataccgattgaagatattatccataatgatcacacaattccgtttccgaacaca 217  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  251609 aatccaaaaccctaccatcatccaagtccaaaaaagaggtcttacaataccgattgaagatattatccataatgatcacacaattccgtttccgaacaca 251510  T
Q  218 caaatccgatgcagaaacagaaaatgaacatagccgccccaagaacaaaactctatcccctatattcgccaattttacccacnnnnnnnccttttcatta 317  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||       |||||||||||    
T  251509 caaatccgatgcagaaacagaaaatgaacatagccaccccaagaacaaaactctatcccctatattcgccaactttacccacttcttttccttttcatta 251410  T
Q  318 agcttaaacacgttaatccttatatgttcatcaggagcatcaaacctccgctcataaacatctgctaacaacaaatcaccgtcgctctccaccaagaatt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||    
T  251409 agcttaaacacgttaatccttatatgttcatcaggagcatcaaacctccgctggtaaacatctgctaacaacaaatcactgtcgctctccaccaagaatt 251310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 235012 - 235422
Alignment:
Q  18 attagaaacctttcaatgcaagataacatactttgctactaattcagcttctttatccgaggtgtacggaacaatttagaatatttaggataactggaca 117  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| ||| ||  |  ||||||| |||||||| ||| ||| ||||||    
T  235012 attagaaacctttcaatgcaagataacatactctgttactaattcagcttcttcatctgagatgg-caaaacaattcagaatattcagggtaattggaca 235110  T
Q  118 aatccaaaacccgaccatcatccaagtccaaaaaagaggtcttacaatac---cgattgaagatattatccataatgatcacacaattccgtttccgaac 214  Q
    ||   ||||   |||||||||||||||||||||||||| ||||| | | |   ||| |||||||||||||||||||||| ||  |||||| |||  ||||    
T  235111 aaggtaaaagttgaccatcatccaagtccaaaaaagagctcttatactgcacacgagtgaagatattatccataatgatgactaaattccctttgggaac 235210  T
Q  215 acacaaatccgatgcagaaacagaaaatgaacatagccgccccaagaacaaaactctatcccctatattcgccaattttacccacnnnnnnnccttttca 314  Q
    |||||||||||| |||||| ||||||| |||||||||  ||||||||| |||||||||||||||| ||| ||||| || ||||||       ||||||||    
T  235211 acacaaatccgaagcagaagcagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcacccacttcttctccttttca 235310  T
Q  315 ttaagcttaaacacgttaatcctt-----at-atgttcatcaggagcatca--aacctc-cgctcataaacatctgctaacaacaaatcaccgtcgctct 405  Q
    ||||||||||||||||||||||||     || ||  ||||||| | | |||  || |||  | |||||||||||||||||||||||||||||||||||||    
T  235311 ttaagcttaaacacgttaatccttgcacgatcataatcatcagcatcttcatcaatctcatggtcataaacatctgctaacaacaaatcaccgtcgctct 235410  T
Q  406 ccaccaagaatt 417  Q
    |||| |||||||    
T  235411 ccactaagaatt 235422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 246666 - 247067
Alignment:
Q  18 attagaaacctttcaatgcaagataacatactttgctactaattcagcttctttatccgaggtgtacggaacaatttagaatatttaggataactggaca 117  Q
    |||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||| ||| ||  |  ||||||| | |||||| |||||||  |||||    
T  246666 attagaaacctttcaatgcaagataatatactctgttactaattcagcttcttcatctgagatgg-caaaacaattcaaaatattcaggataatcggaca 246764  T
Q  118 aatccaaaacccgaccatcatccaagtccaaaaaagaggtcttacaatac---cgattgaagatattatccataatgatcacacaattccgtttccgaac 214  Q
    ||   ||||  |||||||||||| |||||||||||||| |||||||   |   ||| |||||||||||||||||||||| |||||||||| |||  ||||    
T  246765 aaggtaaaagtcgaccatcatcccagtccaaaaaagagctcttacaccgcacacgagtgaagatattatccataatgatgacacaattccctttgtgaac 246864  T
Q  215 acacaaatccgatgcagaaacagaaaatgaacatagccgccccaagaacaaaactctatcccctatattcgccaattttacccacnnnnnnnccttttca 314  Q
    |||||||||| | |||||| |||||||||| || | |  |||||||||||||||| |||| |||| ||| ||||| || |||||        || || ||    
T  246865 acacaaatccaaagcagaagcagaaaatgaccagaacaaccccaagaacaaaactgtatctcctaaattagccaacttcacccatttcttctcccttgca 246964  T
Q  315 ttaagcttaaacacgttaatccttatatgttcatcaggagcatcaaacctccgctcataaacatctgctaacaacaaatcaccgtcgctctccaccaaga 414  Q
    ||||||||||||| || |||||||| |  | |   |  | ||||||||||  | || |||||||||  ||||||||||||||| | ||||||||| ||||    
T  246965 ttaagcttaaacaagtcaatccttacacatccgcgatcatcatcaaacctatgttcgtaaacatctattaacaacaaatcacccttgctctccactaaga 247064  T
Q  415 att 417  Q
    |||    
T  247065 att 247067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 8814691 - 8814358
Alignment:
Q  18 attagaaacctttcaatgcaagataacatactttgctactaattcagcttcttt-----atcc------gaggtgtacggaacaatttagaatatttagg 106  Q
    |||||||||||||||||||||||||||||||  || ||   |||||||||||||     ||||      ||||||  | ||||||||||||||||| |||    
T  8814691 attagaaacctttcaatgcaagataacatacactgttatgcattcagcttctttagaccatccactttggaggtggccagaacaatttagaatattcagg 8814592  T
Q  107 ataactggacaaatccaaaacccgaccatcatccaagtccaaaaaagaggtcttaca---ataccgattgaagatattatccataatgatcacacaattc 203  Q
    ||||  | |||||  ||||   |||||||||||||||||||||||| ||  | || |   ||  | | ||||||||| ||||||||||||||||||||||    
T  8814591 ataatcgaacaaaggcaaaggtcgaccatcatccaagtccaaaaaatagcccatagaaggatcacaagtgaagatatcatccataatgatcacacaattc 8814492  T
Q  204 cgtttccgaacacacaaatccgatgcagaaacagaaaatgaacatagccgccccaagaacaaaactctatcccctatattcgccaattttacccacnnnn 303  Q
    | |||  |||||||||||||| | |||||| ||||||||||||| |    |||||| ||||||||||||||||||| ||||||||| || ||||||        
T  8814491 cctttgggaacacacaaatccaaagcagaagcagaaaatgaacacaaggaccccaaaaacaaaactctatcccctaaattcgccaacttcacccacttct 8814392  T
Q  304 nnnccttttcattaagcttaaacacgttaatcct 337  Q
       ||||||| ||||||||||||| || ||||||    
T  8814391 tctccttttcgttaagcttaaacatgtcaatcct 8814358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 231373 - 231663
Alignment:
Q  18 attagaaacctttcaatgcaagataacatactttgctactaattcagcttctttatcc------gaggtgtacggaacaatttagaatatttaggataac 111  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||      ||||||    |||||||| | |||||| || |||      
T  231373 attagaaacctttcaatgcaagataacatactttgttactaattcagctactttatccacttttgaggtggcacgaacaattcaaaatattcagcatagt 231472  T
Q  112 tggacaaatccaaaacccgaccatcatccaagtccaaaaa---agaggtcttacaataccgattgaagatattatccataatgatcacacaattccgttt 208  Q
     |  ||||  ||||| ||||||||||||||||||||||||   | ||| |   || |||    |||| ||||||||||||||||| |||||||||| |||    
T  231473 cgatcaaaggcaaaagccgaccatcatccaagtccaaaaacacacagggc--gcattac----tgaaaatattatccataatgatgacacaattcccttt 231566  T
Q  209 ccgaacacacaaatcc------gatgcagaaacagaaaatgaacatagccgccccaagaacaaaactctatcccctatattcgccaattttacccac 299  Q
      ||||||| ||||||      || |||||| ||||||||||||||||   |||||||||||||||| ||||||||| ||| ||||| || ||||||    
T  231567 tggaacacataaatccaaagcagaagcagaagcagaaaatgaacatagggaccccaagaacaaaactatatcccctaaattagccaacttcacccac 231663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 372 - 409
Target Start/End: Complemental strand, 8814311 - 8814274
Alignment:
Q  372 taaacatctgctaacaacaaatcaccgtcgctctccac 409  Q
    |||||||||||||||||||||||||| | |||||||||    
T  8814311 taaacatctgctaacaacaaatcacccttgctctccac 8814274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 213037 - 212988
Alignment:
Q  368 ctcataaacatctgctaacaacaaatcaccgtcgctctccaccaagaatt 417  Q
    ||||||||||||| |||||||||||||||| ||||||||||| |||||||    
T  213037 ctcataaacatctactaacaacaaatcaccctcgctctccactaagaatt 212988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 417
Target Start/End: Original strand, 7012987 - 7013035
Alignment:
Q  369 tcataaacatctgctaacaacaaatcaccgtcgctctccaccaagaatt 417  Q
    ||||||||||||||||||||||||||  | ||||||||||| |||||||    
T  7012987 tcataaacatctgctaacaacaaatcctcctcgctctccactaagaatt 7013035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 417
Target Start/End: Original strand, 7029980 - 7030028
Alignment:
Q  369 tcataaacatctgctaacaacaaatcaccgtcgctctccaccaagaatt 417  Q
    ||||||||||| |||||||||||||| || ||||||||||| |||||||    
T  7029980 tcataaacatccgctaacaacaaatccccctcgctctccactaagaatt 7030028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 7025925 - 7025971
Alignment:
Q  371 ataaacatctgctaacaacaaatcaccgtcgctctccaccaagaatt 417  Q
    ||||||||| |||||||||||||| || ||||||||||| |||||||    
T  7025925 ataaacatccgctaacaacaaatccccctcgctctccactaagaatt 7025971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 279
Target Start/End: Original strand, 7041474 - 7041558
Alignment:
Q  195 acacaattccgtttccgaacacacaaatccgatgcagaaacagaaaatgaacatagccgccccaagaacaaaactctatccccta 279  Q
    |||||||||| |||   ||| ||||||||||| ||||||||||| || |||||||     |||||||||||||| ||||||||||    
T  7041474 acacaattccctttggcaacgcacaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatccccta 7041558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 417
Target Start/End: Original strand, 9170969 - 9171017
Alignment:
Q  369 tcataaacatctgctaacaacaaatcaccgtcgctctccaccaagaatt 417  Q
    |||||||| || |||||||||||||| || ||||||||||| |||||||    
T  9170969 tcataaacgtccgctaacaacaaatctccctcgctctccactaagaatt 9171017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 41985623 - 41985709
Alignment:
Q  212 aacacacaaatccgatgcagaaacagaaaatgaacatagccgccccaagaacaaaactctatcccctatattcgccaattttaccca 298  Q
    |||| |||||||||| |||||| ||||||| ||||||     |||||||||||||||||||||||||| | ||||||| || |||||    
T  41985623 aacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccca 41985709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 9494785 - 9494736
Alignment:
Q  368 ctcataaacatctgctaacaacaaatcaccgtcgctctccaccaagaatt 417  Q
    ||||||||||||| ||||||||||||||||||| ||||| || |||||||    
T  9494785 ctcataaacatctactaacaacaaatcaccgtcactctcgactaagaatt 9494736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 9343839 - 9343907
Alignment:
Q  211 gaacacacaaatccgatgcagaaacagaaaatgaacatagccgccccaagaacaaaactctatccccta 279  Q
    |||||||||||||||| |||||| ||||||| ||||||     ||||||||||||||| ||||||||||    
T  9343839 gaacacacaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatccccta 9343907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 9442134 - 9442101
Alignment:
Q  16 caattagaaacctttcaatgcaagataacatact 49  Q
    |||| |||||||||||||||||||||||||||||    
T  9442134 caataagaaacctttcaatgcaagataacatact 9442101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 18571068 - 18571137
Alignment:
Q  177 atattatccataatgatcacacaattccgtttccgaacacacaaatccgatgcagaaacagaaaatgaac 246  Q
    ||||||| |||||  ||||||||||||| |||   ||||||||||||||| ||||||| |||||| ||||    
T  18571068 atattattcataaaaatcacacaattccctttggaaacacacaaatccgaagcagaaatagaaaaagaac 18571137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 18571268 - 18571317
Alignment:
Q  368 ctcataaacatctgctaacaacaaatcaccgtcgctctccaccaagaatt 417  Q
    ||||||||| || |||||||||| ||| || |||||||||||||||||||    
T  18571268 ctcataaacgtcagctaacaacagatcgccctcgctctccaccaagaatt 18571317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 417
Target Start/End: Original strand, 33541810 - 33541858
Alignment:
Q  369 tcataaacatctgctaacaacaaatcaccgtcgctctccaccaagaatt 417  Q
    |||||||||||  |||||||||||||||| | ||||||||| |||||||    
T  33541810 tcataaacatccactaacaacaaatcacccttgctctccactaagaatt 33541858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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