View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5122_low_2 (Length: 518)

Name: NF5122_low_2
Description: NF5122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5122_low_2
NF5122_low_2
[»] chr4 (18 HSPs)
chr4 (65-411)||(13763851-13764208)
chr4 (121-263)||(55151084-55151224)
chr4 (24-65)||(28501386-28501427)
chr4 (24-62)||(4415964-4416002)
chr4 (24-62)||(18882350-18882388)
chr4 (24-62)||(20455181-20455219)
chr4 (24-62)||(46949991-46950029)
chr4 (24-62)||(49793090-49793128)
chr4 (24-62)||(56432517-56432555)
chr4 (414-500)||(13764812-13764897)
chr4 (24-61)||(25124246-25124283)
chr4 (24-61)||(29520164-29520201)
chr4 (24-61)||(31937076-31937113)
chr4 (25-62)||(32899219-32899256)
chr4 (24-61)||(49373693-49373730)
chr4 (24-61)||(53564356-53564393)
chr4 (25-61)||(37639888-37639924)
chr4 (25-61)||(55563128-55563164)
[»] chr7 (6 HSPs)
chr7 (24-62)||(9140533-9140571)
chr7 (24-62)||(39135094-39135132)
chr7 (24-62)||(2290016-2290054)
chr7 (24-62)||(34012517-34012555)
chr7 (25-62)||(33381574-33381611)
chr7 (29-65)||(1574715-1574751)
[»] chr5 (9 HSPs)
chr5 (24-62)||(27873345-27873383)
chr5 (24-62)||(3028012-3028050)
chr5 (24-62)||(8949811-8949849)
chr5 (24-62)||(21239098-21239136)
chr5 (24-62)||(23260138-23260176)
chr5 (24-61)||(23286474-23286511)
chr5 (24-61)||(43060411-43060448)
chr5 (25-61)||(19571940-19571976)
chr5 (24-56)||(32478143-32478175)
[»] chr3 (8 HSPs)
chr3 (24-62)||(1111648-1111686)
chr3 (27-62)||(6784726-6784761)
chr3 (24-63)||(46845492-46845531)
chr3 (24-62)||(4759351-4759389)
chr3 (24-62)||(24087335-24087373)
chr3 (24-62)||(41392880-41392918)
chr3 (24-61)||(8321925-8321962)
chr3 (24-60)||(1572332-1572368)
[»] chr6 (7 HSPs)
chr6 (24-64)||(13901638-13901678)
chr6 (24-62)||(402621-402659)
chr6 (24-62)||(15498628-15498666)
chr6 (24-62)||(23604459-23604497)
chr6 (24-62)||(25045643-25045681)
chr6 (24-62)||(34915543-34915581)
chr6 (24-61)||(2090658-2090695)
[»] chr8 (7 HSPs)
chr8 (24-62)||(2152240-2152278)
chr8 (24-62)||(12802610-12802648)
chr8 (24-61)||(5162304-5162341)
chr8 (24-61)||(17069844-17069881)
chr8 (24-61)||(17578392-17578429)
chr8 (24-61)||(18641380-18641417)
chr8 (24-68)||(40784884-40784928)
[»] chr2 (5 HSPs)
chr2 (24-62)||(26322293-26322331)
chr2 (24-61)||(2060316-2060353)
chr2 (24-61)||(7116299-7116336)
chr2 (24-61)||(8912874-8912911)
chr2 (24-61)||(28566151-28566188)
[»] chr1 (5 HSPs)
chr1 (24-62)||(7763749-7763787)
chr1 (24-62)||(25509208-25509246)
chr1 (24-62)||(27037268-27037306)
chr1 (24-62)||(42276161-42276199)
chr1 (24-61)||(43456621-43456658)
[»] scaffold0674 (1 HSPs)
scaffold0674 (24-61)||(5151-5188)
[»] scaffold0549 (1 HSPs)
scaffold0549 (24-61)||(10182-10219)
[»] scaffold0240 (1 HSPs)
scaffold0240 (24-61)||(18497-18534)
[»] scaffold0161 (1 HSPs)
scaffold0161 (24-61)||(3438-3475)
[»] scaffold0107 (1 HSPs)
scaffold0107 (24-61)||(48654-48691)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 8e-84; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 65 - 411
Target Start/End: Original strand, 13763851 - 13764208
Alignment:
Q  65 tcatcggcatcggcaacacaaccacctatgacggcagcatatccacaatggactttaaactcgtccaccttttgcttgctactgtaacaactcatgttgt 164  Q
    ||||| ||||||||||| ||||||||||||||||  |||||||||| ||||  | |||||||||| ||||||||||||||| |||||||| |||||||||    
T  13763851 tcatcagcatcggcaacgcaaccacctatgacggttgcatatccacgatgggatgtaaactcgtcgaccttttgcttgctattgtaacaagtcatgttgt 13763950  T
Q  165 gattattgttacaataagtatggtaaaataaaaaattaggaattgatatgaggaactatatatggtgtgaagattgcattggagagtatgtgtttgtgag 264  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||   ||||||||||| ||| |||||||||||||||||||    
T  13763951 gattattgttacaattagtatggtaaaataaaaacttaggaattgatatgaggaacaatataccatgtgaagattgaatttgagagtatgtgtttgtgag 13764050  T
Q  265 atgagtagaacgctgctaaga----------------tctaactctcattttacaccaataacatcaattgtagtgaacgtgtagcaaatggatgatgaa 348  Q
    | |||||||||||||||||||                  |||||||||||||||||||||||| ||||||||| |||||||||| ||   ||||||||||    
T  13764051 acgagtagaacgctgctaagaaaaggagacatgacaggttaactctcattttacaccaataacctcaattgtaatgaacgtgtaccattgggatgatgaa 13764150  T
Q  349 gggaaatatgatctgtattgtagtctagcaaatatcttcccttcaaacttattggtaaaacat 411  Q
    ||||||| ||||     ||||||||  | |||||||||||||||||||||||| |||||||||    
T  13764151 gggaaatgtgat-----ttgtagtccggaaaatatcttcccttcaaacttatttgtaaaacat 13764208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 121 - 263
Target Start/End: Complemental strand, 55151224 - 55151084
Alignment:
Q  121 aaactcgtccaccttttgcttgctactgtaacaactcatgtt-gtgattattgttacaataagtatggtaaaataaaaaattaggaattgatatgaggaa 219  Q
    ||||| |||||||| | |||||||| ||||||||| |||||| ||||||||| |||||| |    |||||||| ||||||  |||||||||||||| |||    
T  55151224 aaacttgtccacctctggcttgctagtgtaacaacccatgtttgtgattattattacaaga----tggtaaaaaaaaaaaacaggaattgatatgaagaa 55151129  T
Q  220 ctatatatggtgtgaagattgcattggagagtatg-tgtttgtga 263  Q
    |||||||||||||||| |||| ||| ||||| ||| |||||||||    
T  55151128 ctatatatggtgtgaatattgaatttgagagaatgctgtttgtga 55151084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 28501386 - 28501427
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtatcat 65  Q
    |||||||||||||||| ||||||||||||||| |||||||||    
T  28501386 ttctcaaaagggtcttataattagggacggaggtagtatcat 28501427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 4416002 - 4415964
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  4416002 ttctcaaaagggtcttataattagggacggaggtagtat 4415964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 18882388 - 18882350
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  18882388 ttctcaaaaaggtcttataattagggacggagatagtat 18882350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 20455181 - 20455219
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  20455181 ttctcaaaagggtcttataattagggacggaggtagtat 20455219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 46950029 - 46949991
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  46950029 ttctcaaaagggtcttataattagggacggaggtagtat 46949991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 49793128 - 49793090
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  49793128 ttctcaaaagggtcttataattagggacggaggtagtat 49793090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 56432555 - 56432517
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  56432555 ttctcaaaagggtcttataattagggacggaggtagtat 56432517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 500
Target Start/End: Original strand, 13764812 - 13764897
Alignment:
Q  414 ttatttacaaagtacttaatg-aaatgggaagaaaggggtttacaagtgccaagtg--ggcataactacaaggttatatagggcaagaat 500  Q
    |||||||||||||||| | || ||||||| ||||||||||||    | ||||||||  |||||| ||||||||||||| |||||||||||    
T  13764812 ttatttacaaagtactcagtgaaaatgggtagaaaggggttt----gcgccaagtggtggcatagctacaaggttatagagggcaagaat 13764897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 25124246 - 25124283
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  25124246 ttctcaaaagggtcttataattagggacggaggtagta 25124283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 29520164 - 29520201
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  29520164 ttctcaaaagggtcttataattagggacggaggtagta 29520201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 31937113 - 31937076
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  31937113 ttctcaaaagggtcttataattagggacggaggtagta 31937076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 32899219 - 32899256
Alignment:
Q  25 tctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  32899219 tctcaaaagggtcttataattagggacggaggtagtat 32899256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 49373693 - 49373730
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  49373693 ttctcaaaagggtcttataattagggacggaggtagta 49373730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 53564356 - 53564393
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  53564356 ttctcaaaagggtcttataattagggacggaggtagta 53564393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 37639888 - 37639924
Alignment:
Q  25 tctcaaaagggtcttgtaattagggacggagatagta 61  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  37639888 tctcaaaagagtcttataattagggacggagatagta 37639924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 55563128 - 55563164
Alignment:
Q  25 tctcaaaagggtcttgtaattagggacggagatagta 61  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  55563128 tctcaaaagggtcttataattagggacggaggtagta 55563164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 9140533 - 9140571
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  9140533 ttctcaaaagggtcttataattagggacggagatagtat 9140571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 39135132 - 39135094
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  39135132 ttctcaaaagggtcttgtaattagggacggaggtagtat 39135094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 2290016 - 2290054
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  2290016 ttctcaaaagggtcttataattagggacggaggtagtat 2290054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 34012517 - 34012555
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  34012517 ttctcaaaagggtcttataattagggacggaggtagtat 34012555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 33381574 - 33381611
Alignment:
Q  25 tctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  33381574 tctcaaaagggtcttataattagggacggaggtagtat 33381611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 1574751 - 1574715
Alignment:
Q  29 aaaagggtcttgtaattagggacggagatagtatcat 65  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  1574751 aaaagggtcttataattagggacggaggtagtatcat 1574715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 27873345 - 27873383
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  27873345 ttctcaaaagggtcttataattagggacggagatagtat 27873383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 3028050 - 3028012
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  3028050 ttctcaaaagggtcttataattagggacggaggtagtat 3028012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 8949849 - 8949811
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  8949849 ttctcaaaagggtcttataattagggacggaggtagtat 8949811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 21239136 - 21239098
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  21239136 ttctcaaaagggtcttctaattagggacggaggtagtat 21239098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 23260138 - 23260176
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  23260138 ttctcaaaagggtcttataattagggacggaggtagtat 23260176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 23286474 - 23286511
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  23286474 ttctcaaaagggtcttataattagggacggaggtagta 23286511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 43060411 - 43060448
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  43060411 ttctcaaaagggtcttataattagggacggaggtagta 43060448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 19571940 - 19571976
Alignment:
Q  25 tctcaaaagggtcttgtaattagggacggagatagta 61  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  19571940 tctcaaaagggtcttataattagggacggaggtagta 19571976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 32478175 - 32478143
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggaga 56  Q
    |||||||||||||||| ||||||||||||||||    
T  32478175 ttctcaaaagggtcttataattagggacggaga 32478143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 1111648 - 1111686
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  1111648 ttctcaaaagggtcttataattagggacggagatagtat 1111686  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 6784726 - 6784761
Alignment:
Q  27 tcaaaagggtcttgtaattagggacggagatagtat 62  Q
    ||||||||||||| ||||||||||||||||||||||    
T  6784726 tcaaaagggtcttataattagggacggagatagtat 6784761  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 46845492 - 46845531
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtatc 63  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  46845492 ttctcaaaagggtcttataattagggacggaggtagtatc 46845531  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 4759351 - 4759389
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  4759351 ttctcaaaagggtcttataattagggacggaggtagtat 4759389  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 24087335 - 24087373
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  24087335 ttctcaaaagggtcttataattagggacggaggtagtat 24087373  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 41392880 - 41392918
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  41392880 ttctcaaaagggtcttataattagggacggaggtagtat 41392918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 8321962 - 8321925
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  8321962 ttctcaaaagggtcttataattagggacggaggtagta 8321925  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 1572368 - 1572332
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagt 60  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  1572368 ttctcaaaagggtcttataattagggacggagttagt 1572332  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 13901678 - 13901638
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtatca 64  Q
    |||||||||||||||| ||||||||||||||| ||||||||    
T  13901678 ttctcaaaagggtcttataattagggacggaggtagtatca 13901638  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 402621 - 402659
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  402621 ttctcaaaagggtcttataattagggacggaggtagtat 402659  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 15498666 - 15498628
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  15498666 ttctcaaaagggtcttataattagggacggaggtagtat 15498628  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 23604497 - 23604459
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  23604497 ttctcaaaagggtcttataattagggacggaggtagtat 23604459  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 25045643 - 25045681
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  25045643 ttctcaaaagggtcttataattagggacggaggtagtat 25045681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 34915543 - 34915581
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  34915543 ttctcaaaagggtcttataattagggacggaggtagtat 34915581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 2090695 - 2090658
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  2090695 ttctcaaaagggtcttataattagggacggaggtagta 2090658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 2152240 - 2152278
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  2152240 ttctcaaaagggtcttataattagggacggaggtagtat 2152278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 12802648 - 12802610
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  12802648 ttctcaaaagggtcttataattagggacggaggtagtat 12802610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 5162341 - 5162304
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  5162341 ttctcaaaagggtcttataattagggacggaggtagta 5162304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 17069844 - 17069881
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  17069844 ttctcaaaagggtcttataattagggacggaggtagta 17069881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 17578429 - 17578392
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  17578429 ttctcaaaagggtcttataattagggacggaggtagta 17578392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 18641380 - 18641417
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  18641380 ttctcaaaagggtcttataattagggacggaggtagta 18641417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 40784928 - 40784884
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtatcatcat 68  Q
    ||||||||| |||||| ||||||||||||||| |||||| |||||    
T  40784928 ttctcaaaaaggtcttataattagggacggaggtagtattatcat 40784884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 26322293 - 26322331
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  26322293 ttctcaaaagggtcttataattagggacggaggtagtat 26322331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 2060353 - 2060316
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  2060353 ttctcaaaagggtcttataattagggacggaggtagta 2060316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 7116299 - 7116336
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  7116299 ttctcaaaagggtcttataattagggacggaggtagta 7116336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 8912874 - 8912911
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  8912874 ttctcaaaagggtcttataattagggacggaggtagta 8912911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 28566188 - 28566151
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  28566188 ttctcaaaagggtcttataattagggacggaggtagta 28566151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 7763749 - 7763787
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  7763749 ttctcaaaagggtcttataattagggacggaggtagtat 7763787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 25509246 - 25509208
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  25509246 ttctcaaaagggtcttataattagggacggaggtagtat 25509208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 27037306 - 27037268
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  27037306 ttctcaaaagggtcttataattagggacggaggtagtat 27037268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 42276161 - 42276199
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagtat 62  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  42276161 ttctcaaaagggtcttataattagggacggaggtagtat 42276199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 43456621 - 43456658
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  43456621 ttctcaaaagggtcttataattagggacggaggtagta 43456658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 5188 - 5151
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  5188 ttctcaaaagggtcttataattagggacggaggtagta 5151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 10182 - 10219
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  10182 ttctcaaaagggtcttataattagggacggaggtagta 10219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 18534 - 18497
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  18534 ttctcaaaagggtcttataattagggacggaggtagta 18497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 3475 - 3438
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  3475 ttctcaaaagggtcttataattagggacggaggtagta 3438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 48691 - 48654
Alignment:
Q  24 ttctcaaaagggtcttgtaattagggacggagatagta 61  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  48691 ttctcaaaagggtcttataattagggacggaggtagta 48654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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