View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5122_low_4 (Length: 375)
Name: NF5122_low_4
Description: NF5122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5122_low_4 |
 | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0018 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 358
Target Start/End: Complemental strand, 153349 - 153004
Alignment:
| Q |
13 |
aaaatatggaagaacagtggatcaccaacacctcttgaatactatgaccataattagttagaccatccgcacaactattcccctcctgaaatatatgcga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
153349 |
aaaatatggaagaacagtggatcaccaacacatcctgaatactgtgaccattattagctagaccatccgcacaactattcccctcctgaaatatatgcga |
153250 |
T |
|
| Q |
113 |
agaaactacctgaaaacctgttgaaaagcatttttggcacctgtttctcaaacggatcggcaccaaagaggcattattaaaagccaacaatgcactagta |
212 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
153249 |
agaaaccacctgaaaacctgttgaaaagcagttgtggcacctgtttctcaaacggatcggcaccaaagaggcattattaaaagccaactatgcactagta |
153150 |
T |
|
| Q |
213 |
gaatcactttctaaccaaatgtaaccttgctgcagagcgttttccatagccataataaaaccaaagattttggcctcaaaaattgagaatgctccaagat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||| |
|
|
| T |
153149 |
gaatcactttctaaccaaatgtaaccttgttgcagagcgttctccatagccataataaaaccaaagattttgacctcaaaaacagagaatgcttcaagat |
153050 |
T |
|
| Q |
313 |
tacctgcaaaacaactcattaaagatcctctgttatccctgaaaat |
358 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
153049 |
tacctgcaaaacaagtcattaaagatcctctgttatccctgaaaat |
153004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 358
Target Start/End: Original strand, 41443863 - 41444215
Alignment:
| Q |
13 |
aaaatatggaagaacagtggatcaccaacacctcttgaatactatgaccataattagttagaccatccgcacaactattcccctcctgaaatatatgcga |
112 |
Q |
| |
|
||||| ||||||| |||||| |||||| || ||||||||| |||| || ||||| | ||| |||||||||||||||||||||| | |||||||| || |
|
|
| T |
41443863 |
aaaatctggaagagtagtggaccaccaa-acaccttgaatacggtgacgatgattagctggactatccgcacaactattcccctcccggaatatatgtga |
41443961 |
T |
|
| Q |
113 |
agaaactacctgaaaacctgttgaaaagcatttttggcacctgtttctcaaacggatcggcacc--aaagaggcattattaaaagccaacaatgcactag |
210 |
Q |
| |
|
|| || |||||||||||||| | ||||| || || ||||||||||||||||||||| |||| | ||||||||| |||||||||||||| |||||| |
|
|
| T |
41443962 |
aggaatcacctgaaaacctgtcggtaagcagttgtgccacctgtttctcaaacggatcaacaccagagagaggcattcttaaaagccaacaaaacactag |
41444061 |
T |
|
| Q |
211 |
tagaatcactttctaaccaaatgt------aaccttgctgcagagcgttttccatagccataataaaaccaaagattttggcctcaaaaattgagaatgc |
304 |
Q |
| |
|
||||||| |||||| |||||||| |||| ||||||||||| |||||||||||| | |||||||||||| ||||||||||| ||||| || |
|
|
| T |
41444062 |
tagaatcgttttctacccaaatgtttccccaaccctgctgcagagctagctccatagccatagcataaccaaagatttcggcctcaaaaacagagaaggc |
41444161 |
T |
|
| Q |
305 |
tccaagattacctgcaaaacaactcattaaagatcctctgttatccctgaaaat |
358 |
Q |
| |
|
||||| |||||||||||| |||| ||| ||||||||||| || ||||| ||||| |
|
|
| T |
41444162 |
tccaatattacctgcaaatcaacccatcaaagatcctctattgtccctaaaaat |
41444215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 48 - 358
Target Start/End: Complemental strand, 32879748 - 32879434
Alignment:
| Q |
48 |
tgaatactatgaccataattagttagaccatccgcacaactattcccctcctgaaatatatgcgaagaaactacctgaaaacctgttgaaaagcattttt |
147 |
Q |
| |
|
|||||| | ||||||| ||||| |||||||||||||||||||||||||| | |||||||||||||||| |||||||||| ||| |||||| || | |
|
|
| T |
32879748 |
tgaatattgtgaccatgattagcacgaccatccgcacaactattcccctcccgtaatatatgcgaagaaatcacctgaaaacatgtcagaaagcaattgt |
32879649 |
T |
|
| Q |
148 |
ggcacctgtttctcaaacggatcggcaccaaagaggcattattaaaagccaacaatgcactagtagaatcactttctaaccaaatgt------aaccttg |
241 |
Q |
| |
|
| || | |||| ||||||||||||||||| ||||||||| | |||||| |||| ||| |||||||| | |||||| |||||||| | |||| | |
|
|
| T |
32879648 |
gccatcggtttttcaaacggatcggcacc--agaggcattctaaaaagcgaacagtgcgctagtagagttactttccaaccaaatatttccccaacccag |
32879551 |
T |
|
| Q |
242 |
ctgcagagcgttttccatagccataataaaaccaaagattttggcctcaaaaattgagaatgctccaagattacctgcaaaacaactcattaaagatcct |
341 |
Q |
| |
|
|| || ||| | ||||||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||| | ||| ||||| ||| |
|
|
| T |
32879550 |
ctacaaagcatgctccatagccataataaaacaaaagatttcggcatcaaaaacagagaatgctccaagattacctgcaaaacatcccatcaaagaccct |
32879451 |
T |
|
| Q |
342 |
ctgttatccctgaaaat |
358 |
Q |
| |
|
||||| ||||| ||||| |
|
|
| T |
32879450 |
ctgttgtccctaaaaat |
32879434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 49355726 - 49355646
Alignment:
| Q |
154 |
tgtttctcaaacggatcggcaccaaagaggcattattaaaagccaacaatgcactagtagaatcactttctaaccaaatgt |
234 |
Q |
| |
|
||||||||||| |||| ||||||||||| || || ||||| |||||||| ||| ||| |||||||| ||||||||||||| |
|
|
| T |
49355726 |
tgtttctcaaatggattggcaccaaagatgcgttcttaaaggccaacaacacacaagttgaatcactctctaaccaaatgt |
49355646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 102 - 234
Target Start/End: Complemental strand, 8500817 - 8500686
Alignment:
| Q |
102 |
aatatatgcgaagaaactacctgaaaacctgttgaaaagcatttttggcacctgtttctcaaacggatcggcaccaaagaggcattattaaaagccaaca |
201 |
Q |
| |
|
|||||||||||||||| |||| ||| |||| ||||| || || || |||||||||||||||||||| ||||||| ||| || || ||||| ||||||| |
|
|
| T |
8500817 |
aatatatgcgaagaaatcacctaaaatcctgccgaaaa-caattatgccacctgtttctcaaacggatgggcaccagagatgcgttcttaaatgccaaca |
8500719 |
T |
|
| Q |
202 |
atgcactagtagaatcactttctaaccaaatgt |
234 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||| |
|
|
| T |
8500718 |
atgcactagttgaatcactctctaaccaaatgt |
8500686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 214
Target Start/End: Original strand, 6169493 - 6169636
Alignment:
| Q |
72 |
agaccatccgcacaactattcccctcctgaaatatatgcgaagaaactacctgaaaacctgttgaaaagcatttttggcacctgtttctcaaacggatcg |
171 |
Q |
| |
|
||||| |||||||| ||||||| || | | |||||||||||||||| | |||||||||||| |||||| || || ||||| |||||||||| ||||| |
|
|
| T |
6169493 |
agaccgtccgcacagctattcctctaccggaatatatgcgaagaaatcatctgaaaacctgtcagaaagcagttgtgccacctatttctcaaacagatcg |
6169592 |
T |
|
| Q |
172 |
gcaccaaagaggcattatt-aaaagccaacaatgcactagtaga |
214 |
Q |
| |
|
|||||| |||||| || || |||| ||||||||||||| ||||| |
|
|
| T |
6169593 |
gcaccagagaggcgttcttaaaaaaccaacaatgcacttgtaga |
6169636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 14103203 - 14103108
Alignment:
| Q |
103 |
atatatgcgaagaaactacctgaaaacctgttgaaaagcatttttggcacctgtttctcaaacggatcggcaccaaagaggcattattaaaagcca |
198 |
Q |
| |
|
|||||| |||||||| |||| ||||||||| | ||| || || || |||||||||||||||||||||||||||| |||||| || |||||||||| |
|
|
| T |
14103203 |
atatattcgaagaaatcaccttaaaacctgtcggaaaacagttgtgccacctgtttctcaaacggatcggcaccagagaggctttcttaaaagcca |
14103108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University