View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5122_low_5 (Length: 349)

Name: NF5122_low_5
Description: NF5122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5122_low_5
NF5122_low_5
[»] chr8 (10 HSPs)
chr8 (222-331)||(31908811-31908920)
chr8 (11-111)||(31909063-31909162)
chr8 (163-223)||(31908951-31909011)
chr8 (10-68)||(12062873-12062931)
chr8 (17-74)||(35416089-35416146)
chr8 (11-68)||(369370-369425)
chr8 (14-68)||(3788506-3788561)
chr8 (37-68)||(19472489-19472520)
chr8 (37-68)||(19543414-19543445)
chr8 (37-68)||(19589251-19589282)
[»] chr3 (6 HSPs)
chr3 (11-74)||(20868784-20868847)
chr3 (16-74)||(20871432-20871490)
chr3 (11-76)||(24595313-24595377)
chr3 (14-74)||(27462217-27462277)
chr3 (20-74)||(27462290-27462344)
chr3 (17-75)||(447069-447129)
[»] chr2 (2 HSPs)
chr2 (11-75)||(26608007-26608069)
chr2 (221-282)||(19525205-19525266)
[»] chr1 (3 HSPs)
chr1 (14-68)||(16385670-16385725)
chr1 (11-48)||(20225517-20225554)
chr1 (229-276)||(6430734-6430782)
[»] chr4 (2 HSPs)
chr4 (11-74)||(55849419-55849483)
chr4 (14-60)||(46432549-46432596)
[»] scaffold0889 (1 HSPs)
scaffold0889 (12-59)||(3292-3339)
[»] scaffold0870 (1 HSPs)
scaffold0870 (12-59)||(3496-3543)
[»] chr7 (6 HSPs)
chr7 (14-68)||(1773530-1773585)
chr7 (14-68)||(2577087-2577142)
chr7 (37-68)||(26389286-26389317)
chr7 (37-67)||(18446705-18446735)
chr7 (11-51)||(9457700-9457739)
chr7 (235-270)||(32367730-32367766)
[»] chr5 (1 HSPs)
chr5 (14-68)||(4215340-4215395)
[»] chr6 (5 HSPs)
chr6 (17-75)||(3075025-3075083)
chr6 (14-67)||(9664639-9664692)
chr6 (11-74)||(787374-787437)
chr6 (37-68)||(33638784-33638815)
chr6 (37-74)||(21146819-21146856)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 222 - 331
Target Start/End: Complemental strand, 31908920 - 31908811
Alignment:
Q  222 attcacgatttgtaaaataggtctttgattcacaatttgaatctcattttgataaacatgctcaaaaacgttttttcttttaacattattcataaacaat 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31908920 attcacgatttgtaaaataggtctttgattcacaatttgaatctcattttgataaacatgctcaaaaacgttttttcttttaacattattcataaacaat 31908821  T
Q  322 agaaggacat 331  Q
    ||| ||||||    
T  31908820 agagggacat 31908811  T

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Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 31909162 - 31909063
Alignment:
Q  11 atcatcaatacaatagctttgtaagcttttctctctattttcatggatgccatgtttcctaacaaatcactgtctaaacacagtgtaggtgtagctgacc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31909162 atcatcaatacaatagctttgtaagcttttctctctattttcatggatgc-atgtttcctaacaaatcactgtctaaacacagtgtaggtgtagctgacc 31909064  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 31909011 - 31908951
Alignment:
Q  163 catgaatcatattcgatataccatgtcgcttgtttttacttaaaattacatttttattaat 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31909011 catgaatcatattcgatataccatgtcgcttgtttttacttaaaattacatttttattaat 31908951  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 12062873 - 12062931
Alignment:
Q  10 catcatcaatacaatagctttgtaagcttttctctctattttcatggatgccatgtttc 68  Q
    ||||||||| | ||||| ||| |||||||||||||||||||||||||||||||||||||    
T  12062873 catcatcaagagaatagttttctaagcttttctctctattttcatggatgccatgtttc 12062931  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 35416146 - 35416089
Alignment:
Q  17 aatacaatagctttgtaagcttttctctctattttcatggatgccatgtttcctaaca 74  Q
    |||||||||| |||  ||||||||||||||||||| |||||||||||||||| |||||    
T  35416146 aatacaatagtttttcaagcttttctctctatttttatggatgccatgtttcttaaca 35416089  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 369370 - 369425
Alignment:
Q  11 atcatcaatacaatagctttgtaagcttttctctctattttcatggatgccatgtttc 68  Q
    ||||||||||||||||  ||||||| |||||||| |||||||||||||| ||||||||    
T  369370 atcatcaatacaatag--ttgtaagtttttctctttattttcatggatgtcatgtttc 369425  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 3788561 - 3788506
Alignment:
Q  14 atcaatacaatagctttgtaagctt-ttctctctattttcatggatgccatgtttc 68  Q
    ||||||||||||  ||| ||| ||| ||||||||||||||||||||||||||||||    
T  3788561 atcaatacaataattttctaaacttcttctctctattttcatggatgccatgtttc 3788506  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 19472520 - 19472489
Alignment:
Q  37 ttttctctctattttcatggatgccatgtttc 68  Q
    ||||||||||||||||||||||||||||||||    
T  19472520 ttttctctctattttcatggatgccatgtttc 19472489  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 19543445 - 19543414
Alignment:
Q  37 ttttctctctattttcatggatgccatgtttc 68  Q
    ||||||||||||||||||||||||||||||||    
T  19543445 ttttctctctattttcatggatgccatgtttc 19543414  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 19589251 - 19589282
Alignment:
Q  37 ttttctctctattttcatggatgccatgtttc 68  Q
    ||||||||||||||||||||||||||||||||    
T  19589251 ttttctctctattttcatggatgccatgtttc 19589282  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 20868784 - 20868847
Alignment:
Q  11 atcatcaatacaatagctttgtaagcttttctctctattttcatggatgccatgtttcctaaca 74  Q
    |||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||| ||||    
T  20868784 atcatcaatacaatagttttctaagcttttctctctcttttcatggatgccatgtttcccaaca 20868847  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 20871432 - 20871490
Alignment:
Q  16 caatacaatagctttgtaagcttttctctctattttcatggatgccatgtttcctaaca 74  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||| ||||||||| ||||    
T  20871432 caatacaatagttttctaagcttttctctctcttttcatggatgtcatgtttcccaaca 20871490  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 24595313 - 24595377
Alignment:
Q  11 atcatcaatacaatagctttgtaagcttttctctctattttcatggatgccatgtttcctaacaaa 76  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||||||||   ||||||||||||||    
T  24595313 atcatcaatacaatag-tttctaagcttttctctctatcttcatggatgttgtgtttcctaacaaa 24595377  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 27462217 - 27462277
Alignment:
Q  14 atcaatacaatagctttgtaagcttttctctctattttcatggatgccatgtttcctaaca 74  Q
    ||||||||||||| |||  |||||||||||||||| | |||||||||||||||| ||||||    
T  27462217 atcaatacaatagttttccaagcttttctctctatatccatggatgccatgtttactaaca 27462277  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 27462290 - 27462344
Alignment:
Q  20 acaatagctttgtaagcttttctctctattttcatggatgccatgtttcctaaca 74  Q
    ||||||| |||  |||||||||||||||| | |||||||||||||||| ||||||    
T  27462290 acaatagttttccaagcttttctctctatatccatggatgccatgtttactaaca 27462344  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 447129 - 447069
Alignment:
Q  17 aatacaatagctttgtaagctttt--ctctctattttcatggatgccatgtttcctaacaa 75  Q
    ||||||| ||||||||||| ||||  ||||||| |||||||||| ||||||||| ||||||    
T  447129 aatacaacagctttgtaagtttttttctctctagtttcatggataccatgtttcttaacaa 447069  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 26608069 - 26608007
Alignment:
Q  11 atcatcaatacaatagctttgtaagcttttctctctattttcatggatgccatgtttcctaacaa 75  Q
    |||||||||||||||  ||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  26608069 atcatcaatacaata--tttctaagcttttctctctattttcatggatgtcatgtttcttaacaa 26608007  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 19525266 - 19525205
Alignment:
Q  221 aattcacgatttgtaaaataggtctttgattcacaatttgaatctcattttgataaacatgc 282  Q
    |||||| |||| | |||||||||||||||| |||||||||||||||| |||||||| |||||    
T  19525266 aattcatgattcgaaaaataggtctttgatgcacaatttgaatctcaatttgataaccatgc 19525205  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 16385670 - 16385725
Alignment:
Q  14 atcaatacaatagctttgtaagctttt-ctctctattttcatggatgccatgtttc 68  Q
    |||||||||||| |||||||||||||| || |||||||||||||||||||||||||    
T  16385670 atcaatacaataactttgtaagctttttctttctattttcatggatgccatgtttc 16385725  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 20225554 - 20225517
Alignment:
Q  11 atcatcaatacaatagctttgtaagcttttctctctat 48  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  20225554 atcatcaatacaatagttttgcaagcttttctctctat 20225517  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 6430734 - 6430782
Alignment:
Q  229 atttgtaaaataggtcttt-gattcacaatttgaatctcattttgataa 276  Q
    ||||| ||||||||||||| |||||||||||||||||||  ||||||||    
T  6430734 atttggaaaataggtcttttgattcacaatttgaatctcgatttgataa 6430782  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 55849483 - 55849419
Alignment:
Q  11 atcatcaatacaatagctttgt-aagcttttctctctattttcatggatgccatgtttcctaaca 74  Q
    |||||||||||||||| |||   |||||||||||||||| | |||||||||||||||||||||||    
T  55849483 atcatcaatacaatagttttcccaagcttttctctctatatccatggatgccatgtttcctaaca 55849419  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 46432549 - 46432596
Alignment:
Q  14 atcaatacaatagctttgtaagctttt-ctctctattttcatggatgc 60  Q
    ||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  46432549 atcaatacaataattttgtaagcttttcctctctattttcatggatgc 46432596  T

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Target: scaffold0889 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0889
Description:

Target: scaffold0889; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 3339 - 3292
Alignment:
Q  12 tcatcaatacaatagctttgtaagcttttctctctattttcatggatg 59  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||||||||    
T  3339 tcatcgatacaatagttttgtaagcttttatctctattttcatggatg 3292  T

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Target: scaffold0870 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0870
Description:

Target: scaffold0870; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 3543 - 3496
Alignment:
Q  12 tcatcaatacaatagctttgtaagcttttctctctattttcatggatg 59  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||||||||    
T  3543 tcatcgatacaatagttttgtaagcttttatctctattttcatggatg 3496  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 1773585 - 1773530
Alignment:
Q  14 atcaatacaatagctttgtaagctttt-ctctctattttcatggatgccatgtttc 68  Q
    |||||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||    
T  1773585 atcaatacaataactttgtaagcttttactctctatttttatggatgtcatgtttc 1773530  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 2577087 - 2577142
Alignment:
Q  14 atcaatacaatagctttgtaagctt-ttctctctattttcatggatgccatgtttc 68  Q
    ||||||||||||  ||| ||||||| ||||||||||||||||||||||||||||||    
T  2577087 atcaatacaataattttctaagcttcttctctctattttcatggatgccatgtttc 2577142  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 26389286 - 26389317
Alignment:
Q  37 ttttctctctattttcatggatgccatgtttc 68  Q
    ||||||||||||||||||||||||||||||||    
T  26389286 ttttctctctattttcatggatgccatgtttc 26389317  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 67
Target Start/End: Original strand, 18446705 - 18446735
Alignment:
Q  37 ttttctctctattttcatggatgccatgttt 67  Q
    |||||||||||||||||||||||||||||||    
T  18446705 ttttctctctattttcatggatgccatgttt 18446735  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 9457700 - 9457739
Alignment:
Q  11 atcatcaatacaatagctttgtaagcttttctctctatttt 51  Q
    ||||||||||||||||||||||||| |||| ||||||||||    
T  9457700 atcatcaatacaatagctttgtaag-ttttttctctatttt 9457739  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 270
Target Start/End: Complemental strand, 32367766 - 32367730
Alignment:
Q  235 aaaataggtcttt-gattcacaatttgaatctcattt 270  Q
    ||||||||||||| |||||||||||||||||||||||    
T  32367766 aaaataggtctttcgattcacaatttgaatctcattt 32367730  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 4215340 - 4215395
Alignment:
Q  14 atcaatacaatagctttgtaagctttt-ctctctattttcatggatgccatgtttc 68  Q
    |||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||||    
T  4215340 atcaatacaataactttctaagctttttctctccattttcatggatgccatgtttc 4215395  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 3075025 - 3075083
Alignment:
Q  17 aatacaatagctttgtaagcttttctctctattttcatggatgccatgtttcctaacaa 75  Q
    |||||||||| |||  |||||||||||||||| | |||||||||||||||| |||||||    
T  3075025 aatacaatagttttccaagcttttctctctatatccatggatgccatgttttctaacaa 3075083  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 9664692 - 9664639
Alignment:
Q  14 atcaatacaatagctttgtaagcttttctctctattttcatggatgccatgttt 67  Q
    ||||||||||||| |||  |||||||||||||||| | ||||||||||||||||    
T  9664692 atcaatacaatagtttttcaagcttttctctctatatccatggatgccatgttt 9664639  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 787374 - 787437
Alignment:
Q  11 atcatcaatacaatagctttgtaagcttttctctctattttcatggatgccatgtttcctaaca 74  Q
    |||||||||||||||| |||  || ||||||||||||| |  ||||||| ||||||||||||||    
T  787374 atcatcaatacaatagttttccaaacttttctctctatatctatggatgacatgtttcctaaca 787437  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 33638815 - 33638784
Alignment:
Q  37 ttttctctctattttcatggatgccatgtttc 68  Q
    ||||||||||||||||||||||||||||||||    
T  33638815 ttttctctctattttcatggatgccatgtttc 33638784  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 21146856 - 21146819
Alignment:
Q  37 ttttctctctattttcatggatgccatgtttcctaaca 74  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  21146856 ttttctctctattttcatggatgacatgtttcttaaca 21146819  T

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