View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5122_low_6 (Length: 297)
Name: NF5122_low_6
Description: NF5122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5122_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 11349649 - 11349779
Alignment:
| Q |
1 |
ttattatgtaccaaattacttgttatgtggatggactaaagagtttttgagtctttgttacaatcaagcatggatcatcaaattatgttgtaataatgaa |
100 |
Q |
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| T |
11349649 |
ttattatgaaccaaattacttgttatgtggatggattaacgagtttttgagtctttgttacaatcaagcatggatcatcaaattatgttgtaataatgaa |
11349748 |
T |
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| Q |
101 |
gatattcgtgtgtcaaatgatattttagaac |
131 |
Q |
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| T |
11349749 |
gctattcgtgtgtcaaaggatattttagaac |
11349779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 11350052 - 11350173
Alignment:
| Q |
10 |
accaaattacttgttatgtggatggactaaagagtttttgagtctttgttacaatcaagcatggatcatcaaattatgttgtaataatgaagatattcgt |
109 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
11350052 |
accaaattacttgttatgtggatggattaaagagtttttgagtctttgttacaatcaagcatgggtcatcaaattatgttgtaataatgaagctattcgt |
11350151 |
T |
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| Q |
110 |
gtgtcaaatgatattttagaac |
131 |
Q |
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| T |
11350152 |
gtgtcaaatgatattttagaac |
11350173 |
T |
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