View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5122_low_7 (Length: 281)
Name: NF5122_low_7
Description: NF5122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5122_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 262
Target Start/End: Complemental strand, 14397877 - 14397628
Alignment:
| Q |
13 |
aatatgtacaaaatcacaacattaagcttgtttatgaagaatgacatacatataacttaactgtgctgcctgtacaaattgaaacaatatatttttgtac |
112 |
Q |
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| T |
14397877 |
aatatgtacaaaatcacaacattaagcttgtttatgaagaatgacatacatataacttaactgtgctgcctgtacaaattgaaacaatatatttttgtac |
14397778 |
T |
|
| Q |
113 |
ctgctgaagtctaaccagcacataaaaggagacctttccataaaacagaaaacnnnnnnnntatgacaattacatttcatctccttcaacacaggcatca |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
14397777 |
ctgctgaagtctaaccagcacataaaaggagacctttccataaaacaaaaaacaaaaaaaatatgacaattacatttcatctccttcaacaccggcatca |
14397678 |
T |
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| Q |
213 |
gccattccttcagcctcaccttcaccttgagccttattatcatattctcc |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14397677 |
gccattccttcagcctcaccttcaccttgagccttattatcatattctcc |
14397628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 14391625 - 14391482
Alignment:
| Q |
13 |
aatatgtacaaaatcacaacattaagcttgtttatgaagaatgacatacatataacttaactgtgctgcctgtacaaattgaaacaatatatttttgtac |
112 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
14391625 |
aatatgtacaaaatcactacattaggcttgtttatgaagaatgacatacatataacttaactgtgctgcttgtacaaattgaaactatatatttttgtac |
14391526 |
T |
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| Q |
113 |
ctgctgaagtctaaccagcacataaaaggagacctttccataaa |
156 |
Q |
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| T |
14391525 |
ctgctgaagtctaatcagcacataaaaggagacctttctataaa |
14391482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 13857634 - 13857681
Alignment:
| Q |
21 |
caaaatcacaacattaagcttgtttatgaagaatgacatacatataac |
68 |
Q |
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| T |
13857634 |
caaaatcacgacattaggcttgtttatgaagaatgacatacatataac |
13857681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 16024509 - 16024564
Alignment:
| Q |
207 |
gcatcagccattccttcagcctcaccttcaccttgagccttattatcatattctcc |
262 |
Q |
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| T |
16024509 |
gcatcagccattccttcagcttcaccttcactttcagccttatcatcatgttctcc |
16024564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 16024335 - 16024387
Alignment:
| Q |
105 |
ttttgtacctgctgaagtctaaccagcacataaaaggagacctttccataaaa |
157 |
Q |
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||||||||||| |||||||||| ||||||||| |||||| | ||||||||||| |
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| T |
16024335 |
ttttgtacctgatgaagtctaatcagcacatagaaggagtcatttccataaaa |
16024387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 14358599 - 14358637
Alignment:
| Q |
21 |
caaaatcacaacattaagcttgtttatgaagaatgacat |
59 |
Q |
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||||| |||||||||| |||||||||||||||||||||| |
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| T |
14358599 |
caaaagcacaacattaggcttgtttatgaagaatgacat |
14358637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 14389980 - 14389943
Alignment:
| Q |
13 |
aatatgtacaaaatcacaacattaagcttgtttatgaa |
50 |
Q |
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||||||| |||||||||||||||| ||||||||||||| |
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| T |
14389980 |
aatatgtgcaaaatcacaacattaggcttgtttatgaa |
14389943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 13883844 - 13883900
Alignment:
| Q |
207 |
gcatcagccattccttcagcctcaccttcaccttgagccttattatcatattctcct |
263 |
Q |
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||||||||||| ||||||| |||||| ||| || |||||||||||||| ||||||| |
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| T |
13883844 |
gcatcagccatcgcttcagcttcacctccactttcagccttattatcatgttctcct |
13883900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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