View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5123-Insertion-1 (Length: 610)
Name: NF5123-Insertion-1
Description: NF5123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5123-Insertion-1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 8 - 610
Target Start/End: Original strand, 41820976 - 41821572
Alignment:
| Q |
8 |
gttaccccaaaacaatcctttataatatctttctcactcaggatgatgggtttttggtcaacattttcataaannnnnnnatgatttttcttgaatttct |
107 |
Q |
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| T |
41820976 |
gttaccccaaaacaatcctttataatatctttctcactcaggatgatgggtttttggtcaacattttcataaatttttttatgatttttcttgaatttct |
41821075 |
T |
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| Q |
108 |
ttgatatccacaagcatatcatgtcatgcatcttcaaatgttttagtgtttcctcaacgattctttaccaaccacaaatcaacaaaccataatctaagag |
207 |
Q |
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| T |
41821076 |
ttgatatccacaagcatatcatgtcatgcatcttcaaatgttttagtgtttcctcaacgattctttaccaaccacaaatcaacaatccataatctaagag |
41821175 |
T |
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| Q |
208 |
cttggttatgcttgcttcaatgcaatccttgattttttttggggtaccctctatgannnnnnnnnnnggatggctagtggttcacttatgcccaaaaata |
307 |
Q |
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| T |
41821176 |
cttggttatgcttgcttcaatgcaatccttga-tttttttagggtaccctctatga---ttttttttggatggctagtggttcacttatgcccagaaata |
41821271 |
T |
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| Q |
308 |
gctccgaaactagctttggttgacctttgaatggtctgattaggcagttcacaacccacctagataattgcctcgtttagtataatactataagccaatt |
407 |
Q |
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| T |
41821272 |
gctccgaaactagctttggttgacctttgaatggtctgattaggcagttcacaacccacctagataattgcctcgtttagtataa---tataagccaatt |
41821368 |
T |
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| Q |
408 |
gcagaattgatattaaaaagcttagtctattttctttttgaataattatggattgacaacc-tttttcctcatatcactcatatatcattctatgtggca |
506 |
Q |
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| T |
41821369 |
gcagaatttatattaaaaagcttagtctattttctttttggataattatgggttgacaaccttttttcctcacgtcactcatatatcattctatgtggca |
41821468 |
T |
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| Q |
507 |
nnnnnnnnnnnnnacttctcttcccttttatcctctctccacatgagggtgcagaatagagagtttgccatataaagtgatcaatgtatcgttactcttt |
606 |
Q |
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| T |
41821469 |
ttttttattttttacttctcttcccttttatcctctctccacatgggggtgcagaatggagagtgtgccatatagggtgatcaatgtatcgttactcttt |
41821568 |
T |
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