View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5123-Insertion-2 (Length: 279)
Name: NF5123-Insertion-2
Description: NF5123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5123-Insertion-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 44516203 - 44516052
Alignment:
| Q |
5 |
acaggaagtgccaca--agtaaaacaatacaagtagcaacaggaaccaacagcataccaaacacctgataacaaaagcactaaccaaaagataactaaac |
102 |
Q |
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| T |
44516203 |
acaggaagtgccacacaagtaaaacaatacaagtagcaacaggaaccaacagcataccaaacacccgataacaaaagcactgaccaaaagataactaaac |
44516104 |
T |
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| Q |
103 |
aatcaaagccgctccctattcaaacagcaaaccaaaaataaaccaccaccac |
154 |
Q |
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| T |
44516103 |
aatcaaagccactccctatgcaaacagcaaaccaaaaataaaccaccaccac |
44516052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 165 - 279
Target Start/End: Complemental strand, 44516025 - 44515911
Alignment:
| Q |
165 |
tatcacaatggctccataagcgatgctccgacctgtactcgaacccaatctgacnnnnnnntgaatagctgaactgcaacttaaaactcaagaaccacag |
264 |
Q |
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| T |
44516025 |
tatcacaatggctccataagcgatgctccgacctgtactcaaacccaatctgacaaaaaaatgaatagctgaactgcaaattaaaacttaggaaccacag |
44515926 |
T |
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| Q |
265 |
tttaaatcacaacca |
279 |
Q |
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| T |
44515925 |
tttaaatcacaacca |
44515911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 1917867 - 1917806
Alignment:
| Q |
5 |
acaggaagtgccacaagtaaaacaatacaagtagcaacaggaaccaacagcataccaaacac |
66 |
Q |
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| T |
1917867 |
acaggaagtgacacaagcaaaacaatacaagaaacaccaggaaccaatagcaaaccaaacac |
1917806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 29120920 - 29120968
Alignment:
| Q |
231 |
agctgaactgcaacttaaaactcaagaaccacagtttaaatcacaacca |
279 |
Q |
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| T |
29120920 |
agctgaactgcaaataaaatctcaaaaaccacagtttaaatcacaacca |
29120968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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