View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5123_high_1 (Length: 371)
Name: NF5123_high_1
Description: NF5123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5123_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 24 - 353
Target Start/End: Original strand, 3361359 - 3361688
Alignment:
| Q |
24 |
gcagcgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcagtacaggccaaatcattctcaaggcacaaga |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3361359 |
gcagcgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcaatacaggccaaatcattctcaaggcacaaga |
3361458 |
T |
|
| Q |
124 |
gatcattttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattccacattcaaggcatgttcttcaatctc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3361459 |
gatcattttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattccacattcaaggcatgttcttcaatctc |
3361558 |
T |
|
| Q |
224 |
atctgcaaaactcaacagaaagctacagtaaattatcaacatacacggtgggatttatctcctcgaattagtcagtcctatggttcggataccaaaatct |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3361559 |
atctgcaaaactcaacagaaagctacagtaaattatcaacatagacggttgaatttgtctcctcgaattagtcagtcctatggttcggataccgaaatct |
3361658 |
T |
|
| Q |
324 |
caactaacaaacagagaaatacgaagtacc |
353 |
Q |
| |
|
||||||||||||| | |||||| ||||||| |
|
|
| T |
3361659 |
caactaacaaacaaaaaaataccaagtacc |
3361688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 256
Target Start/End: Original strand, 35907501 - 35907688
Alignment:
| Q |
69 |
atttcaggccagttttcatgctcagtacaggccaaatcattctcaaggcacaagagatcattttcgagtttctcaatttcaacatctgccttggtgttca |
168 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| ||||||| |||| || ||||| |||| | || |||||| ||| |||||| |||||| ||| |
|
|
| T |
35907501 |
atttcaggccagttttcattttcagtccaggccaattcattctgaagggacgcgagattcatttccaattgctcaatctcattatctgcattggtgatca |
35907600 |
T |
|
| Q |
169 |
aaattctcaaaacttgaacacatgattccacattcaaggcatgttcttcaatctcatctgcaaaactcaacagaaagctacagtaaat |
256 |
Q |
| |
|
| ||||||||| |||||||| | | | ||| | ||||| ||| || || ||||||||||||||||||| |||||| |||||||| |
|
|
| T |
35907601 |
tacatctcaaaacctgaacacagcacttctcatccttggcatcttcctccatatcatctgcaaaactcaacaaaaagctccagtaaat |
35907688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University